Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_G16
         (918 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28920.1 68416.m03611 zinc finger homeobox family protein / Z...    28   7.5  
At5g09960.1 68418.m01151 expressed protein similar to unknown pr...    28   10.0 

>At3g28920.1 68416.m03611 zinc finger homeobox family protein /
           ZF-HD homeobox family protein contains Pfam PF04770:
           ZF-HD protein dimerisation region; contains Pfam
           TIGR01566: ZF-HD homeobox protein Cys/His-rich domain;
           contains TIGRFAM TIGR01565: homeobox domain, ZF-HD
           class; similar to ZF-HD homeobox protein (GI:13277220)
           [Flaveria bidentis]
          Length = 312

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -1

Query: 354 AM*YRIHHQHNPPSPLS*P 298
           A+ Y+ HH+H+PP PL+ P
Sbjct: 124 AIEYQPHHRHHPPPPLAPP 142


>At5g09960.1 68418.m01151 expressed protein similar to unknown
           protein (emb|CAB61744.1)
          Length = 112

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -3

Query: 364 GSVXNVIQNPPPAQSTKPLELTESIF*RHLVAVHRYVPNSHVPAFSFWFCFQAC 203
           G+   +I+ P  A ST  L   +S   R     H + P+S     S + CF  C
Sbjct: 56  GNEEELIKPPESATSTAELTTVQSENQREFSPSHHHQPHSPSTRRSMFSCFNCC 109


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,291,585
Number of Sequences: 28952
Number of extensions: 225550
Number of successful extensions: 598
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2178500352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)