Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_G15
         (883 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39971| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_16010| Best HMM Match : Ribosomal_L6e_N (HMM E-Value=1.9)           30   2.2  
SB_57638| Best HMM Match : F5_F8_type_C (HMM E-Value=1.7e-11)          30   2.9  
SB_51990| Best HMM Match : Guanylate_cyc (HMM E-Value=0)               29   5.0  
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  

>SB_39971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = +2

Query: 419 LKLASPKTXFKYNRKAKEPIVRSDALEVDYGTLTFT--AVFPSISDLQLSNAEVFSYV-H 589
           + LA P   FK   K+    V    ++  YG + FT  A+ P    L+  NAE    V  
Sbjct: 326 IPLAYPGQYFKVLMKSSSAHVVKSLIKSTYGYVVFTAGAILPVEGPLKSVNAECLLMVEQ 385

Query: 590 EINPKF 607
           E+NP F
Sbjct: 386 EVNPDF 391


>SB_16010| Best HMM Match : Ribosomal_L6e_N (HMM E-Value=1.9)
          Length = 251

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 36/144 (25%), Positives = 57/144 (39%), Gaps = 9/144 (6%)
 Frame = +2

Query: 155 KKTSKDPXPNFDLNCIREYFSRNSQCQLVRGPVPDPLPLSYYRVDIPNSNLTVEYHDVKT 334
           KK  +     F +      F R      V GP  D   ++ + VDI  ++ T+     + 
Sbjct: 37  KKPGQTEQKKFQIWLTNLVFRREIVSVQVGGPDSDTNAVASH-VDIDCASSTLCLSGGQM 95

Query: 335 RGFDTIKIIEFYINSKTEKLVLAAEVQSLKLASP---------KTXFKYNRKAKEPIVRS 487
           R  D  K++E Y N    K V+   ++   L SP         K  F+Y RK +E     
Sbjct: 96  RVKDIEKVLEAYKNKGQLKHVI---LEDNPLVSPPCEVVSEGVKAVFEYLRKRQERRDLF 152

Query: 488 DALEVDYGTLTFTAVFPSISDLQL 559
           +    +Y T  FT   PS+  + +
Sbjct: 153 EGYNKEYDTFAFTTKIPSLLHISI 176


>SB_57638| Best HMM Match : F5_F8_type_C (HMM E-Value=1.7e-11)
          Length = 502

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +2

Query: 305 LTVEYHDVKTRGFDTIKIIEFYINSKTEKLVLAAEVQSLKLASPK 439
           +T  +  V ++  +     EF+  SK EK++LA +  +LKL  PK
Sbjct: 11  ITTNFLSVFSKTHEVEWSTEFFQRSKNEKVLLALQEDTLKLKCPK 55


>SB_51990| Best HMM Match : Guanylate_cyc (HMM E-Value=0)
          Length = 1055

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 19/60 (31%), Positives = 26/60 (43%)
 Frame = -2

Query: 570 SALLNCRSLMLGNTAVNVRVP*STSNASLLTIGSLAFLLYLXIVFGEANFKDCTSAANTS 391
           S LLN       +  VN       SN    TI  L FLL+  +    +NF DC+  A+ +
Sbjct: 665 STLLNPSVTTFASPKVNFFTDVLLSNIVFFTICVLCFLLFNPVSLIFSNFMDCSQLADNN 724


>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4529

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
 Frame = +2

Query: 242  RGPVPD-PLPLSYY--RVDIPNSNLTVEYHDVKTRGFDTIKIIEFY-INSKTEKLVLAAE 409
            R P PD  + LS Y  R  + N ++TVE   V+  G ++   ++   +N    K V   +
Sbjct: 3799 RFPSPDLDVVLSKYAQRKPLVNGDVTVE-GQVEVMGLESKVPLKLRAMNMVPLKSVRELK 3857

Query: 410  VQSLKLASPKTXFKYNRKAKEP---IVRSDALEVDYGTLTFTAVFPSISDLQLSNAEVFS 580
             +    A      +++  A  P    + S + E+D  +      FP++S+ ++S + VFS
Sbjct: 3858 TERFHSAENGFSTEHSSAASSPDTQYIMSSSPEIDASSKPKNLSFPALSNREISESPVFS 3917

Query: 581  YVHEINPK 604
             +  +N K
Sbjct: 3918 PLAPVNIK 3925


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,365,160
Number of Sequences: 59808
Number of extensions: 369504
Number of successful extensions: 1014
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2514529411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)