Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_G15
         (883 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M28999-1|AAA28696.1| 1286|Drosophila melanogaster patched protein.     32   1.2  
AE013599-680|AAF59062.1| 1286|Drosophila melanogaster CG2411-PA ...    32   1.2  
AE014134-2801|AAF53581.1|  308|Drosophila melanogaster CG6012-PA...    29   8.5  

>M28999-1|AAA28696.1| 1286|Drosophila melanogaster patched protein.
          Length = 1286

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 5/111 (4%)
 Frame = +2

Query: 104 DRFCCCF--WRELGSGR*PKKTSKDPXPNFDLNCIREYFSRNSQ-CQLVRGPVPDPLPLS 274
           D FCCCF  W+E      PK       P   LN      +R+ + C   R P+P   PL 
Sbjct: 594 DIFCCCFPVWKEQ-----PKVAP----PVLPLNNNNGRGARHPKSCNNNRVPLPAQNPLL 644

Query: 275 YYRVDIPNSNLTVEYHDVKTRGFD--TIKIIEFYINSKTEKLVLAAEVQSL 421
             R DIP S+ ++    + T  F   T  ++  ++   T    LAA + SL
Sbjct: 645 EQRADIPGSSHSLASFSLATFAFQHYTPFLMRSWVKFLTVMGFLAALISSL 695


>AE013599-680|AAF59062.1| 1286|Drosophila melanogaster CG2411-PA
           protein.
          Length = 1286

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 5/111 (4%)
 Frame = +2

Query: 104 DRFCCCF--WRELGSGR*PKKTSKDPXPNFDLNCIREYFSRNSQ-CQLVRGPVPDPLPLS 274
           D FCCCF  W+E      PK       P   LN      +R+ + C   R P+P   PL 
Sbjct: 594 DIFCCCFPVWKEQ-----PKVAP----PVLPLNNNNGRGARHPKSCNNNRVPLPAQNPLL 644

Query: 275 YYRVDIPNSNLTVEYHDVKTRGFD--TIKIIEFYINSKTEKLVLAAEVQSL 421
             R DIP S+ ++    + T  F   T  ++  ++   T    LAA + SL
Sbjct: 645 EQRADIPGSSHSLASFSLATFAFQHYTPFLMRSWVKFLTVMGFLAALISSL 695


>AE014134-2801|AAF53581.1|  308|Drosophila melanogaster CG6012-PA
           protein.
          Length = 308

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 11/45 (24%), Positives = 28/45 (62%)
 Frame = +2

Query: 368 YINSKTEKLVLAAEVQSLKLASPKTXFKYNRKAKEPIVRSDALEV 502
           +I  +T  + ++  V ++ +A+PK+  KYN++  + I+ ++ + V
Sbjct: 118 HIEKETANIPISILVNNVGIATPKSLLKYNQEETQNIIDTNVVAV 162


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,783,983
Number of Sequences: 53049
Number of extensions: 558452
Number of successful extensions: 1399
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1397
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4291240668
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)