Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_G15
         (883 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id...    31   0.77 
At3g07950.1 68416.m00972 rhomboid protein-related contains 6 tra...    31   1.3  
At5g40250.1 68418.m04883 zinc finger (C3HC4-type RING finger) fa...    28   7.2  
At2g47560.1 68415.m05935 zinc finger (C3HC4-type RING finger) fa...    28   7.2  
At2g14080.1 68415.m01566 disease resistance protein (TIR-NBS-LRR...    28   7.2  
At1g26720.1 68414.m03254 expressed protein ; expression supporte...    28   7.2  

>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
            identical to auxin transport protein; BIG [Arabidopsis
            thaliana] GI:21779966; contains Pfam profiles PF02207:
            Putative zinc finger in N-recognin, PF00569: Zinc finger
            ZZ type
          Length = 5098

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
 Frame = -3

Query: 284  LCSNLKVVDLVQVPLLIDIENFLRNIHECSSSRSS-XQGLLMFFWVIGRIQVLSKSNSRS 108
            +C+ L++ DL ++ L+ D+E F+R+I      RS   +G++    ++  +  LSK +S+S
Sbjct: 1216 ICAVLQLPDLTELFLMKDMEGFVRDISAEQIDRSQVLEGVIT--KIVDVMDSLSKDSSKS 1273

Query: 107  D 105
            D
Sbjct: 1274 D 1274


>At3g07950.1 68416.m00972 rhomboid protein-related contains 6
           transmembrane domains; similar to phosphatidyl inositol
           glycan class T (GI:14456615) [Homo sapiens]
          Length = 304

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +2

Query: 233 QLVRGPVPDPLPLSYYRVDIPNSNLTVEYHDVKTRG 340
           +L+R PV DP+ L ++R+    SN T E HD  T G
Sbjct: 222 ELLR-PVIDPIALIFHRMLCGRSNATSEDHDYSTSG 256


>At5g40250.1 68418.m04883 zinc finger (C3HC4-type RING finger)
           family protein similar to RING-H2 finger protein RHX1a
           [Arabidopsis thaliana] GI:3790591; contains Pfam profile
           PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 376

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 185 FDLNCIREYFSRNSQCQLVRGPVPDP 262
           F LNCI  +   NS C L RG +  P
Sbjct: 166 FHLNCIDTWLQSNSTCPLCRGTLFSP 191


>At2g47560.1 68415.m05935 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 227

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/60 (28%), Positives = 24/60 (40%)
 Frame = +2

Query: 182 NFDLNCIREYFSRNSQCQLVRGPVPDPLPLSYYRVDIPNSNLTVEYHDVKTRGFDTIKII 361
           +F ++CI  +F   S C L R PV  P  +        +S LT      +    D   II
Sbjct: 130 SFHVDCIDTWFRSRSTCPLCRAPVQPPFQVIETGSSSSSSPLTFPTEGCEREPIDLAGII 189


>At2g14080.1 68415.m01566 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1215

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/31 (32%), Positives = 22/31 (70%)
 Frame = -3

Query: 278 SNLKVVDLVQVPLLIDIENFLRNIHECSSSR 186
           +NLK+++L  +  L+++ +F+ N+H+ S  R
Sbjct: 865 TNLKILNLGYLSCLVELPSFIGNLHKLSELR 895


>At1g26720.1 68414.m03254 expressed protein ; expression supported
           by MPSS
          Length = 169

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 504 STSNASLLTIGSLAFLLYLXIVFGEANFKD 415
           +T   +LL IGS  FLL   I FG  N +D
Sbjct: 2   TTPTYNLLCIGSFMFLLCFSIGFGRKNLQD 31


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,671,549
Number of Sequences: 28952
Number of extensions: 277269
Number of successful extensions: 695
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2077687200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)