Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_G14
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    34   0.023
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.031
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch...    27   2.7  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 34.3 bits (75), Expect = 0.023
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +1

Query: 607 PPPPPXKKGXXPPXXXPPPP 666
           PPPPP   G  PP   PPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPP 28


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.9 bits (74), Expect = 0.031
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +1

Query: 607 PPPPPXKKGXXPPXXXPPPP 666
           PPPPP   G  PP   PPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPPP 783



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +1

Query: 607 PPPPPXKKGXXPPXXXPPPPXXXG 678
           PPP P   G  PP   PPPP   G
Sbjct: 752 PPPAPIMGGPPPP---PPPPGVAG 772


>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 370

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +2

Query: 98  NLVQNCELTRIPLFRNNNLYFWTNISVFVLGRN 196
           N    C+++ +P+   +  Y +TN+++  L RN
Sbjct: 54  NFASGCKISAMPILNGSMSYVYTNVNLENLNRN 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,979,553
Number of Sequences: 5004
Number of extensions: 28719
Number of successful extensions: 83
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)