BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_G14 (884 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 34 0.023 SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 34 0.031 SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch... 27 2.7 >SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosaccharomyces pombe|chr 1|||Manual Length = 2363 Score = 34.3 bits (75), Expect = 0.023 Identities = 12/20 (60%), Positives = 12/20 (60%) Frame = +1 Query: 607 PPPPPXKKGXXPPXXXPPPP 666 PPPPP G PP PPPP Sbjct: 9 PPPPPPPPGFEPPSQPPPPP 28 >SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||Manual Length = 1461 Score = 33.9 bits (74), Expect = 0.031 Identities = 12/20 (60%), Positives = 12/20 (60%) Frame = +1 Query: 607 PPPPPXKKGXXPPXXXPPPP 666 PPPPP G PP PPPP Sbjct: 764 PPPPPGVAGAGPPPPPPPPP 783 Score = 27.1 bits (57), Expect = 3.6 Identities = 12/24 (50%), Positives = 12/24 (50%) Frame = +1 Query: 607 PPPPPXKKGXXPPXXXPPPPXXXG 678 PPP P G PP PPPP G Sbjct: 752 PPPAPIMGGPPPP---PPPPGVAG 772 >SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Schizosaccharomyces pombe|chr 1|||Manual Length = 370 Score = 27.5 bits (58), Expect = 2.7 Identities = 9/33 (27%), Positives = 19/33 (57%) Frame = +2 Query: 98 NLVQNCELTRIPLFRNNNLYFWTNISVFVLGRN 196 N C+++ +P+ + Y +TN+++ L RN Sbjct: 54 NFASGCKISAMPILNGSMSYVYTNVNLENLNRN 86 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,979,553 Number of Sequences: 5004 Number of extensions: 28719 Number of successful extensions: 83 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 64 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 444486180 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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