Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_G13
(873 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P42766 Cluster: 60S ribosomal protein L35; n=81; Eukary... 53 8e-06
UniRef50_P34662 Cluster: 60S ribosomal protein L35; n=33; Eukary... 53 1e-05
UniRef50_Q4UIF8 Cluster: 60S ribosomal protein L35; n=6; Alveola... 42 0.027
UniRef50_Q4PGL7 Cluster: Putative uncharacterized protein; n=1; ... 40 0.083
UniRef50_Q4Q8V7 Cluster: 60S ribosomal protein L35, putative; n=... 37 0.58
UniRef50_Q5CJ48 Cluster: 60S ribosomal protein L35; n=2; Cryptos... 36 1.0
UniRef50_Q9U935 Cluster: Ag15 protein; n=7; Alveolata|Rep: Ag15 ... 34 4.1
UniRef50_Q4WT53 Cluster: 60S ribosomal protein L35; n=5; cellula... 33 7.2
UniRef50_Q5C6T1 Cluster: SJCHGC07823 protein; n=1; Schistosoma j... 33 9.5
>UniRef50_P42766 Cluster: 60S ribosomal protein L35; n=81;
Eukaryota|Rep: 60S ribosomal protein L35 - Homo sapiens
(Human)
Length = 123
Score = 53.2 bits (122), Expect = 8e-06
Identities = 27/35 (77%), Positives = 30/35 (85%)
Frame = +2
Query: 176 TNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQ 280
+ LRVAKVTGG ASKLSKIRVVRK+IARV V +Q
Sbjct: 29 SQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQ 63
>UniRef50_P34662 Cluster: 60S ribosomal protein L35; n=33;
Eukaryota|Rep: 60S ribosomal protein L35 -
Caenorhabditis elegans
Length = 123
Score = 52.8 bits (121), Expect = 1e-05
Identities = 30/63 (47%), Positives = 35/63 (55%)
Frame = +2
Query: 92 MGKVXCSALRXXXXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 271
M K+ C +LR LRV+KVTGG ASKLSKIRVVRK IAR+ V
Sbjct: 1 MTKLKCKSLRGEKKDALQKKLDEQKTELATLRVSKVTGGAASKLSKIRVVRKNIARLLTV 60
Query: 272 YHQ 280
+Q
Sbjct: 61 INQ 63
>UniRef50_Q4UIF8 Cluster: 60S ribosomal protein L35; n=6;
Alveolata|Rep: 60S ribosomal protein L35 - Theileria
annulata
Length = 142
Score = 41.5 bits (93), Expect = 0.027
Identities = 20/33 (60%), Positives = 26/33 (78%)
Frame = +2
Query: 185 RVAKVTGGVASKLSKIRVVRKAIARVYIVYHQK 283
RV+KVT SKLSKI +VRKA+A+V VY+Q+
Sbjct: 51 RVSKVTATGTSKLSKITLVRKAVAKVLTVYNQR 83
>UniRef50_Q4PGL7 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 218
Score = 39.9 bits (89), Expect = 0.083
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = +2
Query: 179 NLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQK 283
NLRV KV GG +SK+ +I +RK IARV V +QK
Sbjct: 103 NLRVQKVAGGSSSKILRINSLRKDIARVLTVMNQK 137
>UniRef50_Q4Q8V7 Cluster: 60S ribosomal protein L35, putative; n=5;
Trypanosomatidae|Rep: 60S ribosomal protein L35,
putative - Leishmania major
Length = 127
Score = 37.1 bits (82), Expect = 0.58
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +2
Query: 176 TNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQ 280
+ LRV + TGG ++L +IR +RK+IAR+ V +Q
Sbjct: 30 SQLRVVQQTGGAETRLGRIRPIRKSIARILTVLNQ 64
>UniRef50_Q5CJ48 Cluster: 60S ribosomal protein L35; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L35 -
Cryptosporidium hominis
Length = 126
Score = 36.3 bits (80), Expect = 1.0
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +2
Query: 179 NLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQK 283
+LRV + TG +KLS+I VVRK IAR+ + Q+
Sbjct: 33 SLRVIQSTGTAPNKLSRINVVRKGIARILTILSQR 67
>UniRef50_Q9U935 Cluster: Ag15 protein; n=7; Alveolata|Rep: Ag15
protein - Plasmodium falciparum
Length = 124
Score = 34.3 bits (75), Expect = 4.1
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = +2
Query: 176 TNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQK 283
+ LR++K G A K SKI VRK +ARV VY+QK
Sbjct: 29 SGLRISKALGNSA-KNSKIHGVRKNVARVLTVYNQK 63
>UniRef50_Q4WT53 Cluster: 60S ribosomal protein L35; n=5; cellular
organisms|Rep: 60S ribosomal protein L35 - Aspergillus
fumigatus (Sartorya fumigata)
Length = 203
Score = 33.5 bits (73), Expect = 7.2
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +2
Query: 176 TNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 271
+ LRV K+ G +SK +I VRK+IARV V
Sbjct: 92 SQLRVQKIAAGASSKTQRIHDVRKSIARVLTV 123
>UniRef50_Q5C6T1 Cluster: SJCHGC07823 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC07823 protein - Schistosoma
japonicum (Blood fluke)
Length = 213
Score = 33.1 bits (72), Expect = 9.5
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -3
Query: 322 GRWX--FXKGXGPXHLLVIHNVNTCDSFSYNTDLGQFRSNSTSNF 194
GRW F G GP H L H+V D+ + G +++ SNF
Sbjct: 29 GRWGVNFISGSGPQHSLSTHSVFNDDNTDVHGQSGDYKNTKPSNF 73
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 297,984,680
Number of Sequences: 1657284
Number of extensions: 3202513
Number of successful extensions: 4790
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4787
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 77882636090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -