BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_G12 (907 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0) 31 1.7 SB_38389| Best HMM Match : PspA_IM30 (HMM E-Value=0.87) 29 5.2 SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07) 29 6.8 SB_21791| Best HMM Match : V-set (HMM E-Value=1.4) 28 9.0 >SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0) Length = 1706 Score = 30.7 bits (66), Expect = 1.7 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 4/89 (4%) Frame = -1 Query: 523 SAMTKSPQRAMASISTAAPNGSRLTSYVIRAGQALGK--YSA*TLLKVWKSS--MLANKT 356 SA+ +S A+ AA +G +T R + + + A L+ KS+ ++AN+T Sbjct: 1508 SAVNQSTHAAVLLARDAAGHGEEVTKLARREQEVINETHIRARNLIAQTKSAEDLIANQT 1567 Query: 355 VVFTTDSNEAPPASSTCRRLSRA*RVCAS 269 V E P TC+ LSRA V A+ Sbjct: 1568 VRDFI-RREIEPVQDTCQNLSRAAHVAAN 1595 >SB_38389| Best HMM Match : PspA_IM30 (HMM E-Value=0.87) Length = 339 Score = 29.1 bits (62), Expect = 5.2 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 4/89 (4%) Frame = -1 Query: 523 SAMTKSPQRAMASISTAAPNGSRLTSYVIRAGQALGK--YSA*TLLKVWKSS--MLANKT 356 SA+ +S A+ AA +G +T + + + + A L+ KS+ ++AN+T Sbjct: 129 SAVNQSTHAAVLLARDAAGHGEEVTKLARQEQEVINETHIRARNLIAQTKSAEDLIANQT 188 Query: 355 VVFTTDSNEAPPASSTCRRLSRA*RVCAS 269 V E P TC+ LSRA V A+ Sbjct: 189 VRDFI-RREIEPVQDTCQNLSRAAHVAAN 216 >SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07) Length = 694 Score = 28.7 bits (61), Expect = 6.8 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = -1 Query: 580 FNSDKRGNIISVHQGHGPASAMTKSPQ 500 F+ D R + S+HQGH P+ T PQ Sbjct: 85 FHHDWRRALDSLHQGHAPSRPPTPDPQ 111 >SB_21791| Best HMM Match : V-set (HMM E-Value=1.4) Length = 474 Score = 28.3 bits (60), Expect = 9.0 Identities = 19/54 (35%), Positives = 29/54 (53%) Frame = -2 Query: 327 RHQLQVHVADCPEPDGSALQHHRRPSVHLDPIREFQKCIRSCPLKLLDCTDLLV 166 +H+L VH+ C DGSA + RR H + R +R ++LLD T +L+ Sbjct: 281 KHRLMVHLWRCAVRDGSA-EAIRRFFQHFEQFR----MLRMWKMQLLDETTILI 329 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 22,862,745 Number of Sequences: 59808 Number of extensions: 419835 Number of successful extensions: 1149 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 1095 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1148 length of database: 16,821,457 effective HSP length: 82 effective length of database: 11,917,201 effective search space used: 2609867019 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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