Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_G12
         (907 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 31   1.7  
SB_38389| Best HMM Match : PspA_IM30 (HMM E-Value=0.87)                29   5.2  
SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07)                 29   6.8  
SB_21791| Best HMM Match : V-set (HMM E-Value=1.4)                     28   9.0  

>SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1706

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
 Frame = -1

Query: 523  SAMTKSPQRAMASISTAAPNGSRLTSYVIRAGQALGK--YSA*TLLKVWKSS--MLANKT 356
            SA+ +S   A+     AA +G  +T    R  + + +    A  L+   KS+  ++AN+T
Sbjct: 1508 SAVNQSTHAAVLLARDAAGHGEEVTKLARREQEVINETHIRARNLIAQTKSAEDLIANQT 1567

Query: 355  VVFTTDSNEAPPASSTCRRLSRA*RVCAS 269
            V       E  P   TC+ LSRA  V A+
Sbjct: 1568 VRDFI-RREIEPVQDTCQNLSRAAHVAAN 1595


>SB_38389| Best HMM Match : PspA_IM30 (HMM E-Value=0.87)
          Length = 339

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
 Frame = -1

Query: 523 SAMTKSPQRAMASISTAAPNGSRLTSYVIRAGQALGK--YSA*TLLKVWKSS--MLANKT 356
           SA+ +S   A+     AA +G  +T    +  + + +    A  L+   KS+  ++AN+T
Sbjct: 129 SAVNQSTHAAVLLARDAAGHGEEVTKLARQEQEVINETHIRARNLIAQTKSAEDLIANQT 188

Query: 355 VVFTTDSNEAPPASSTCRRLSRA*RVCAS 269
           V       E  P   TC+ LSRA  V A+
Sbjct: 189 VRDFI-RREIEPVQDTCQNLSRAAHVAAN 216


>SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07)
          Length = 694

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 580 FNSDKRGNIISVHQGHGPASAMTKSPQ 500
           F+ D R  + S+HQGH P+   T  PQ
Sbjct: 85  FHHDWRRALDSLHQGHAPSRPPTPDPQ 111


>SB_21791| Best HMM Match : V-set (HMM E-Value=1.4)
          Length = 474

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = -2

Query: 327 RHQLQVHVADCPEPDGSALQHHRRPSVHLDPIREFQKCIRSCPLKLLDCTDLLV 166
           +H+L VH+  C   DGSA +  RR   H +  R     +R   ++LLD T +L+
Sbjct: 281 KHRLMVHLWRCAVRDGSA-EAIRRFFQHFEQFR----MLRMWKMQLLDETTILI 329


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,862,745
Number of Sequences: 59808
Number of extensions: 419835
Number of successful extensions: 1149
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2609867019
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)