BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_G12 (907 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U39851-12|AAV58884.1| 137|Caenorhabditis elegans Hypothetical p... 116 2e-26 U39851-11|AAV58883.1| 171|Caenorhabditis elegans Hypothetical p... 116 2e-26 U39851-10|AAM22035.1| 144|Caenorhabditis elegans Hypothetical p... 116 2e-26 U61958-2|AAB03182.3| 1067|Caenorhabditis elegans Hypothetical pr... 29 6.0 U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co... 28 8.0 >U39851-12|AAV58884.1| 137|Caenorhabditis elegans Hypothetical protein C23G10.2c protein. Length = 137 Score = 116 bits (279), Expect = 2e-26 Identities = 57/114 (50%), Positives = 75/114 (65%) Frame = +3 Query: 171 VGPYSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLEAGGASLESVVK 350 +GPYSQA+ A T+Y+SG LGLD + G QT Q+L NL VL+A GA +VVK Sbjct: 19 IGPYSQAVRAGNTIYLSGSLGLDPKTGDLKEGVVEQTHQSLKNLGEVLKAAGADYGNVVK 78 Query: 351 TTVLLASMDDFQTFNKVYAEYFPKACPARMTYEVSRLPLGAAVEIEAIALCGDL 512 TTVLL ++ DF N+VY +YF PAR Y+V+ LP G VEIEA+A+ G++ Sbjct: 79 TTVLLQNIADFAAVNEVYGQYFKSPYPARAAYQVAALPKGGLVEIEAVAIAGEI 132 >U39851-11|AAV58883.1| 171|Caenorhabditis elegans Hypothetical protein C23G10.2a protein. Length = 171 Score = 116 bits (279), Expect = 2e-26 Identities = 57/114 (50%), Positives = 75/114 (65%) Frame = +3 Query: 171 VGPYSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLEAGGASLESVVK 350 +GPYSQA+ A T+Y+SG LGLD + G QT Q+L NL VL+A GA +VVK Sbjct: 53 IGPYSQAVRAGNTIYLSGSLGLDPKTGDLKEGVVEQTHQSLKNLGEVLKAAGADYGNVVK 112 Query: 351 TTVLLASMDDFQTFNKVYAEYFPKACPARMTYEVSRLPLGAAVEIEAIALCGDL 512 TTVLL ++ DF N+VY +YF PAR Y+V+ LP G VEIEA+A+ G++ Sbjct: 113 TTVLLQNIADFAAVNEVYGQYFKSPYPARAAYQVAALPKGGLVEIEAVAIAGEI 166 >U39851-10|AAM22035.1| 144|Caenorhabditis elegans Hypothetical protein C23G10.2b protein. Length = 144 Score = 116 bits (279), Expect = 2e-26 Identities = 57/114 (50%), Positives = 75/114 (65%) Frame = +3 Query: 171 VGPYSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLEAGGASLESVVK 350 +GPYSQA+ A T+Y+SG LGLD + G QT Q+L NL VL+A GA +VVK Sbjct: 26 IGPYSQAVRAGNTIYLSGSLGLDPKTGDLKEGVVEQTHQSLKNLGEVLKAAGADYGNVVK 85 Query: 351 TTVLLASMDDFQTFNKVYAEYFPKACPARMTYEVSRLPLGAAVEIEAIALCGDL 512 TTVLL ++ DF N+VY +YF PAR Y+V+ LP G VEIEA+A+ G++ Sbjct: 86 TTVLLQNIADFAAVNEVYGQYFKSPYPARAAYQVAALPKGGLVEIEAVAIAGEI 139 >U61958-2|AAB03182.3| 1067|Caenorhabditis elegans Hypothetical protein C25A8.4 protein. Length = 1067 Score = 28.7 bits (61), Expect = 6.0 Identities = 16/55 (29%), Positives = 29/55 (52%) Frame = -3 Query: 506 SAKSDGLDLHSCSQR*STDFVCHSSRASFRKIFCIDFVESLEVVHAS*QNSSFHD 342 S +DGL++ SQ +DF + ++ I D + +E+V A+ Q S++ D Sbjct: 476 STNADGLEISWTSQPMVSDFDKKNLKSFINDIVAADTAKMVEIVVATSQQSAYSD 530 >U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore complex protein protein7 protein. Length = 1217 Score = 28.3 bits (60), Expect = 8.0 Identities = 22/105 (20%), Positives = 42/105 (40%) Frame = -1 Query: 538 GHGPASAMTKSPQRAMASISTAAPNGSRLTSYVIRAGQALGKYSA*TLLKVWKSSMLANK 359 G GP S S ++ ++++S+ A N + +G + A T ++ Sbjct: 568 GTGPKSQPKPSEKQLVSNLSSFASNTPSTVKFGFGSGASTTTTIASTTSNTIPFGSGSSV 627 Query: 358 TVVFTTDSNEAPPASSTCRRLSRA*RVCASAPPQTICASRSNPRI 224 +F APP ++ + A ASAP + +S + R+ Sbjct: 628 APLFGAPKTTAPPPTTVPATIPVAPTTIASAPVAAVTSSSNGTRV 672 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,045,610 Number of Sequences: 27780 Number of extensions: 318962 Number of successful extensions: 754 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 713 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 754 length of database: 12,740,198 effective HSP length: 81 effective length of database: 10,490,018 effective search space used: 2307803960 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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