BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_G12 (907 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g20390.1 68416.m02583 endoribonuclease L-PSP family protein c... 117 9e-27 At3g04480.1 68416.m00475 endoribonuclease L-PSP family protein c... 42 7e-04 At4g35890.1 68417.m05097 La domain-containing protein contains P... 29 4.2 At2g24720.1 68415.m02953 glutamate receptor family protein (GLR2... 29 5.6 At3g60710.1 68416.m06792 F-box family protein contains F-box dom... 28 7.4 At4g38640.1 68417.m05469 choline transporter-related contains we... 28 9.8 >At3g20390.1 68416.m02583 endoribonuclease L-PSP family protein contains Pfam domain PF01042: Endoribonuclease L-PSP Length = 187 Score = 117 bits (282), Expect = 9e-27 Identities = 56/110 (50%), Positives = 76/110 (69%), Gaps = 1/110 (0%) Frame = +3 Query: 171 VGPYSQAILADKTLYISGILGL-DRDAQMVCGGAEAQTRQALDNLRHVLEAGGASLESVV 347 +GPYSQAI A+ +++SG+LGL + V E QT Q L N+ +L+A GA SVV Sbjct: 76 LGPYSQAIKANNLVFLSGVLGLIPETGKFVSESVEDQTEQVLKNMGEILKASGADYSSVV 135 Query: 348 KTTVLLASMDDFQTFNKVYAEYFPKACPARMTYEVSRLPLGAAVEIEAIA 497 KTT++LA + DF+T N++YA+YFP PAR TY+V+ LPL A +EIE IA Sbjct: 136 KTTIMLADLADFKTVNEIYAKYFPAPSPARSTYQVAALPLNAKIEIECIA 185 >At3g04480.1 68416.m00475 endoribonuclease L-PSP family protein contains Pfam domain PF01902: Domain of unknown function Length = 715 Score = 41.5 bits (93), Expect = 7e-04 Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Frame = +3 Query: 171 VGPYSQAILADKTLYISGILGLDRDA-QMVCGGAEAQTRQALDNLRHVLEAGGASLESVV 347 +GPYSQA L L+++G LGLD + GA A+ QAL N + E+ S+ S Sbjct: 425 IGPYSQATLHQSVLHMAGQLGLDPPTMNLQTEGAIAELNQALTNSEAIAESFNCSISSSA 484 Query: 348 KTTVLLAS 371 V+ S Sbjct: 485 ILFVVFCS 492 >At4g35890.1 68417.m05097 La domain-containing protein contains Pfam PF05383: La domain Length = 523 Score = 29.1 bits (62), Expect = 4.2 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = -1 Query: 532 GPASAMTKSPQRAMASISTAAPNGSRLT 449 GP+S +++P +AS+S AAP + LT Sbjct: 64 GPSSPQSRAPIEPIASVSVAAPTAAVLT 91 >At2g24720.1 68415.m02953 glutamate receptor family protein (GLR2.2) plant glutamate receptor family, PMID:11379626 Length = 920 Score = 28.7 bits (61), Expect = 5.6 Identities = 13/48 (27%), Positives = 22/48 (45%) Frame = +3 Query: 279 TRQALDNLRHVLEAGGASLESVVKTTVLLASMDDFQTFNKVYAEYFPK 422 T +D LR + E G ++E V+ + D +TF + FP+ Sbjct: 256 TNGVMDGLRSINETGIEAMEGVLGIKTYIPKSKDLETFRSRWKRRFPQ 303 >At3g60710.1 68416.m06792 F-box family protein contains F-box domain Pfam:PF00646 ; similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250 Length = 320 Score = 28.3 bits (60), Expect = 7.4 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Frame = +1 Query: 382 SKLSTKSMQNIFLKLALLE*-HTKSVDYRWEQLWRSRPSLF 501 S+L + +Q I L L E T + RW LW+S P L+ Sbjct: 6 SQLPNELLQEILLNLPTSESVRTSVLPTRWRNLWQSVPGLY 46 >At4g38640.1 68417.m05469 choline transporter-related contains weak similarity to CD92 protein [Homo sapiens] gi|16945323|emb|CAC82175 Length = 556 Score = 27.9 bits (59), Expect = 9.8 Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 4/109 (3%) Frame = +3 Query: 282 RQALDNLRHVLEAGGASLESVVKTTVLLASMDDFQTFNKVYAEYFPKA-CP-ARMTYEVS 455 R +DN R G ++ LL ++D F +A +A C A+MTYE+ Sbjct: 379 RAIVDNAREENTQGIVNMVLRCCANALLGALDYLNKFTINFAAITGEAYCTSAKMTYELL 438 Query: 456 RLPLGAAVEIEAIA--LCGDLVIAEAGPCPWCTLIMLPLLSELNFISYL 596 R L +AV +E ++ + +V + T +L +S L SY+ Sbjct: 439 RRNLLSAVFVETVSTRILTGIVFVLSAAYAVATWAVLRGVSNLGIDSYV 487 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,109,035 Number of Sequences: 28952 Number of extensions: 297420 Number of successful extensions: 699 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 687 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 698 length of database: 12,070,560 effective HSP length: 81 effective length of database: 9,725,448 effective search space used: 2139598560 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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