Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_G12
         (907 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g20390.1 68416.m02583 endoribonuclease L-PSP family protein c...   117   9e-27
At3g04480.1 68416.m00475 endoribonuclease L-PSP family protein c...    42   7e-04
At4g35890.1 68417.m05097 La domain-containing protein contains P...    29   4.2  
At2g24720.1 68415.m02953 glutamate receptor family protein (GLR2...    29   5.6  
At3g60710.1 68416.m06792 F-box family protein contains F-box dom...    28   7.4  
At4g38640.1 68417.m05469 choline transporter-related contains we...    28   9.8  

>At3g20390.1 68416.m02583 endoribonuclease L-PSP family protein
           contains Pfam domain PF01042: Endoribonuclease L-PSP
          Length = 187

 Score =  117 bits (282), Expect = 9e-27
 Identities = 56/110 (50%), Positives = 76/110 (69%), Gaps = 1/110 (0%)
 Frame = +3

Query: 171 VGPYSQAILADKTLYISGILGL-DRDAQMVCGGAEAQTRQALDNLRHVLEAGGASLESVV 347
           +GPYSQAI A+  +++SG+LGL     + V    E QT Q L N+  +L+A GA   SVV
Sbjct: 76  LGPYSQAIKANNLVFLSGVLGLIPETGKFVSESVEDQTEQVLKNMGEILKASGADYSSVV 135

Query: 348 KTTVLLASMDDFQTFNKVYAEYFPKACPARMTYEVSRLPLGAAVEIEAIA 497
           KTT++LA + DF+T N++YA+YFP   PAR TY+V+ LPL A +EIE IA
Sbjct: 136 KTTIMLADLADFKTVNEIYAKYFPAPSPARSTYQVAALPLNAKIEIECIA 185


>At3g04480.1 68416.m00475 endoribonuclease L-PSP family protein
           contains Pfam domain PF01902: Domain of unknown function
          Length = 715

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +3

Query: 171 VGPYSQAILADKTLYISGILGLDRDA-QMVCGGAEAQTRQALDNLRHVLEAGGASLESVV 347
           +GPYSQA L    L+++G LGLD     +   GA A+  QAL N   + E+   S+ S  
Sbjct: 425 IGPYSQATLHQSVLHMAGQLGLDPPTMNLQTEGAIAELNQALTNSEAIAESFNCSISSSA 484

Query: 348 KTTVLLAS 371
              V+  S
Sbjct: 485 ILFVVFCS 492


>At4g35890.1 68417.m05097 La domain-containing protein contains Pfam
           PF05383: La domain
          Length = 523

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 532 GPASAMTKSPQRAMASISTAAPNGSRLT 449
           GP+S  +++P   +AS+S AAP  + LT
Sbjct: 64  GPSSPQSRAPIEPIASVSVAAPTAAVLT 91


>At2g24720.1 68415.m02953 glutamate receptor family protein (GLR2.2)
           plant glutamate receptor family, PMID:11379626
          Length = 920

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +3

Query: 279 TRQALDNLRHVLEAGGASLESVVKTTVLLASMDDFQTFNKVYAEYFPK 422
           T   +D LR + E G  ++E V+     +    D +TF   +   FP+
Sbjct: 256 TNGVMDGLRSINETGIEAMEGVLGIKTYIPKSKDLETFRSRWKRRFPQ 303


>At3g60710.1 68416.m06792 F-box family protein contains F-box domain
           Pfam:PF00646 ; similar to SKP1 interacting partner 2
           (SKIP2) TIGR_Ath1:At5g67250
          Length = 320

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 382 SKLSTKSMQNIFLKLALLE*-HTKSVDYRWEQLWRSRPSLF 501
           S+L  + +Q I L L   E   T  +  RW  LW+S P L+
Sbjct: 6   SQLPNELLQEILLNLPTSESVRTSVLPTRWRNLWQSVPGLY 46


>At4g38640.1 68417.m05469 choline transporter-related contains weak
           similarity to CD92 protein [Homo sapiens]
           gi|16945323|emb|CAC82175
          Length = 556

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
 Frame = +3

Query: 282 RQALDNLRHVLEAGGASLESVVKTTVLLASMDDFQTFNKVYAEYFPKA-CP-ARMTYEVS 455
           R  +DN R     G  ++        LL ++D    F   +A    +A C  A+MTYE+ 
Sbjct: 379 RAIVDNAREENTQGIVNMVLRCCANALLGALDYLNKFTINFAAITGEAYCTSAKMTYELL 438

Query: 456 RLPLGAAVEIEAIA--LCGDLVIAEAGPCPWCTLIMLPLLSELNFISYL 596
           R  L +AV +E ++  +   +V   +      T  +L  +S L   SY+
Sbjct: 439 RRNLLSAVFVETVSTRILTGIVFVLSAAYAVATWAVLRGVSNLGIDSYV 487


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,109,035
Number of Sequences: 28952
Number of extensions: 297420
Number of successful extensions: 699
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2139598560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)