BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_G11 (890 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 30 0.51 SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 27 3.6 SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 26 6.3 SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 26 6.3 SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 8.3 >SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 834 Score = 29.9 bits (64), Expect = 0.51 Identities = 15/48 (31%), Positives = 27/48 (56%) Frame = +1 Query: 166 PSQHLKACQDMVDIPTKSKVTLDCIPARDRMECLNYVQQRQADFVPVD 309 P L+A Q+++D S++ I + ++ YVQ+++ DF PVD Sbjct: 230 PGNKLEAIQNVIDSLHISRIE---IRTENSIDISQYVQKKEVDFFPVD 274 >SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1191 Score = 27.1 bits (57), Expect = 3.6 Identities = 10/20 (50%), Positives = 15/20 (75%) Frame = +2 Query: 329 PPKYPIRTLSFSRSTEPMKN 388 PPK P+R +S RS+ P++N Sbjct: 306 PPKPPLRKVSTQRSSSPIEN 325 >SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizosaccharomyces pombe|chr 1|||Manual Length = 722 Score = 26.2 bits (55), Expect = 6.3 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = +3 Query: 645 SPDPKTNSAWKXQYNKLCSMCEHPE 719 +PDPKT S +YN C +HPE Sbjct: 90 TPDPKTESPSFVKYNAHCD--DHPE 112 >SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pombe|chr 2|||Manual Length = 963 Score = 26.2 bits (55), Expect = 6.3 Identities = 11/33 (33%), Positives = 16/33 (48%) Frame = +2 Query: 290 PISFQSTRKTCTWPPKYPIRTLSFSRSTEPMKN 388 P+ Q + +PP YPI +S+ T P N Sbjct: 736 PVVSQQQPQPYAFPPMYPIPYVSYGYGTMPYNN 768 >SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 498 Score = 25.8 bits (54), Expect = 8.3 Identities = 13/60 (21%), Positives = 25/60 (41%) Frame = +1 Query: 292 DFVPVDPEDMYVAAKIPNQDFVVFQEYRTDEEPDAPFRYEAVIVIHKDLPIDNLDQLKGL 471 D P+D + + + N V+ TDE P E + + + +D+ D + G+ Sbjct: 100 DLHPLDNDSTRTSKTLKNSSEVLTASKLTDEGNSKPLLEEGEVAVSSPILLDSKDVIMGV 159 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,786,018 Number of Sequences: 5004 Number of extensions: 81996 Number of successful extensions: 195 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 188 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 195 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 448490560 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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