Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_G11
         (890 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12466| Best HMM Match : Transferrin (HMM E-Value=4.4e-21)           56   4e-08
SB_2629| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.9  
SB_42433| Best HMM Match : zf-CW (HMM E-Value=2.4)                     28   8.8  

>SB_12466| Best HMM Match : Transferrin (HMM E-Value=4.4e-21)
          Length = 291

 Score = 56.0 bits (129), Expect = 4e-08
 Identities = 36/139 (25%), Positives = 66/139 (47%), Gaps = 5/139 (3%)
 Frame = +1

Query: 133 NAAKITYKICVPSQHLKACQDMVDIPTK-----SKVTLDCIPARDRMECLNYVQQRQADF 297
           NA K+    C+    ++ CQ +  + ++       V L C+      +C++ +Q+ +AD 
Sbjct: 22  NAPKLGRWCCISDAEVEKCQALAHVASRVVTSNETVNLTCVRGDGVTDCMSRIQRDEADL 81

Query: 298 VPVDPEDMYVAAKIPNQDFVVFQEYRTDEEPDAPFRYEAVIVIHKDLPIDNLDQLKGLKS 477
           V +  ED+Y+A        VV ++Y +    D    Y AV ++     + N+  LKG  +
Sbjct: 82  VTLGEEDIYIAGAKYGLRPVVAEDYGS---KDKHIHY-AVALVRSTTTV-NITTLKGAIT 136

Query: 478 CHTGVNRNVGYKIPLTMLM 534
           CH      +G+KIP+  L+
Sbjct: 137 CHPRAEDMIGWKIPVGFLI 155


>SB_2629| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 538

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 284 GKPISFQSTRKTC-TWPPKYPIRTLSFSRSTEPMKNRMRLSVT 409
           GK  S  S R T  T  P+Y +++LS  R+T P+ N +  +VT
Sbjct: 262 GKSSSVPSKRNTASTHLPEYELKSLSKLRNTNPIHNWINSTVT 304


>SB_42433| Best HMM Match : zf-CW (HMM E-Value=2.4)
          Length = 252

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +1

Query: 235 CIPARDRMECLNYVQQRQADFVPVDPEDMYVAAKIPNQDFVVFQEY 372
           C PA DR EC    + R  D    + +D+YV + I  + +VVF  Y
Sbjct: 94  CWPAMDREECRRNEKYRNCD----EFKDIYVDSCIEVKKWVVFVNY 135


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,668,879
Number of Sequences: 59808
Number of extensions: 663087
Number of successful extensions: 1431
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1430
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)