BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_G10 (857 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 35 0.017 SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces... 27 2.6 SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 27 3.4 SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 26 6.0 SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 26 6.0 >SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual Length = 309 Score = 34.7 bits (76), Expect = 0.017 Identities = 21/62 (33%), Positives = 30/62 (48%) Frame = -3 Query: 381 SPPGPKTLVP*A*PVSLPRSSLKISLL*PAFPKSPSSFCPKVPKTLPPPICLSQVTSRGC 202 +PP P +L P A P + +S P+ P PS+ P PK PPP+ + V + Sbjct: 164 APPIPSSLPPPAQPAAPVKSP-------PSAPSLPSAVPPMPPKVPPPPLSQAPVANTSS 216 Query: 201 RP 196 RP Sbjct: 217 RP 218 >SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces pombe|chr 1|||Manual Length = 711 Score = 27.5 bits (58), Expect = 2.6 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%) Frame = -3 Query: 288 PKSPS-SFCPKVPKTLPPPICLSQVTS 211 P SP SF +VP +PPP+C V S Sbjct: 165 PISPDYSFPLRVPINIPPPLCTPSVVS 191 >SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schizosaccharomyces pombe|chr 1|||Manual Length = 567 Score = 27.1 bits (57), Expect = 3.4 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%) Frame = +3 Query: 447 NRQIGGRSGMTAS--GSGVWDLDKNTHFSAGGMVSKEFGHKRPDVGLQQRSAMI 602 N Q GGR G S G G D + AGG + FG K D + R+A + Sbjct: 124 NVQRGGRGGRYGSSGGRGAGDTVVSRSSGAGGARGRRFGWKDYDKHQRLRNASV 177 >SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharomyces pombe|chr 1|||Manual Length = 249 Score = 26.2 bits (55), Expect = 6.0 Identities = 17/47 (36%), Positives = 28/47 (59%) Frame = -2 Query: 274 IVLSQSAKDLASPHLFVPSDVTRVSPLRIAR*SSNLPRNQKVRKLLR 134 I L++SAK+ +FVP + + +RIA + P+ +KV +LLR Sbjct: 69 IRLNRSAKNKGD--IFVPDETKLLFVIRIAGVKNMPPKIRKVLRLLR 113 >SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 435 Score = 26.2 bits (55), Expect = 6.0 Identities = 12/38 (31%), Positives = 16/38 (42%) Frame = -2 Query: 529 AEKWVFLSRSHTPEPDAVIPDLPPICLFRSIVACAFLF 416 AEKWV L+ P D V+ + C + F F Sbjct: 357 AEKWVLLNGQRCPTCDRVVERIDGCCHMNCLCGTHFCF 394 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,181,970 Number of Sequences: 5004 Number of extensions: 68924 Number of successful extensions: 168 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 163 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 168 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 426466470 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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