BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_G10 (857 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6 SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1 SB_15603| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8 SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40) 28 8.5 >SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1616 Score = 30.7 bits (66), Expect = 1.6 Identities = 38/121 (31%), Positives = 49/121 (40%), Gaps = 4/121 (3%) Frame = -3 Query: 591 ISAEDRRLVFCDRTPWRPYHRQKS----GCSYPDPTHRSLMLSSQICHRFVYLGQ*WLVH 424 +SAE+ FCD R R KS S P+ R+L SS I F L +V Sbjct: 1160 LSAENDMPGFCDTVVERIVKRIKSISRNSSSEICPSCRALETSSLI--EFFLLSAKTIVS 1217 Query: 423 SCSPSLGVRRSLVLSPPGPKTLVP*A*PVSLPRSSLKISLL*PAFPKSPSSFCPKVPKTL 244 SC +L VR + P P T A P S P + I L K+P+ P + Sbjct: 1218 SCLNTLLVRPLETIPAPTPTTPTSPATPASGPLTRTPILL-----KKTPTPALESAPAAM 1272 Query: 243 P 241 P Sbjct: 1273 P 1273 >SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1297 Score = 30.3 bits (65), Expect = 2.1 Identities = 17/42 (40%), Positives = 19/42 (45%) Frame = +2 Query: 230 QMGGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYG 355 Q G G FGT GLFG AG N G +TG +G Sbjct: 48 QTGFGSGFGTTQTTGTGLFGAAGTNTGTGLFGGGTVTGSMFG 89 >SB_15603| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 168 Score = 29.1 bits (62), Expect = 4.8 Identities = 35/123 (28%), Positives = 50/123 (40%), Gaps = 5/123 (4%) Frame = -2 Query: 520 WVFLSRSHTPEPDAVIPDLPPICLFRSIV-----ACAFLFAQSRRPP*FGAVASRS*NSG 356 W+FL+R+ T + P FR+ V AC F+ + P + + N G Sbjct: 34 WLFLNRASTANSERTAIASGPRSNFRAAVAYCRHACPLPFSSTHTPTYTLSFLGQEGNRG 93 Query: 355 AVSLTG*FAAVVIKDLSVVTSFSKESIIVLSQSAKDLASPHLFVPSDVTRVSPLRIAR*S 176 +S G DL+V+ + K S L AK P FV SD R+ L A S Sbjct: 94 TLSKIG-------VDLTVLIASQKAS-AKLESMAKRYEQPTPFVGSDERRLWHLNRAFGS 145 Query: 175 SNL 167 S + Sbjct: 146 SRI 148 >SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40) Length = 933 Score = 28.3 bits (60), Expect = 8.5 Identities = 14/64 (21%), Positives = 28/64 (43%) Frame = +2 Query: 173 TRSAGNPQGRHPRDVTWDKQMGGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAY 352 +R++ + P+ +W ++ VF D F + G+ R+ ++ RG+ A Sbjct: 689 SRNSSSTSESSPKRFSWSQENSKDVVFAGPDLPADNPFNREGFGRQSMSEKRGRAAVDAK 748 Query: 353 GTRV 364 T V Sbjct: 749 KTEV 752 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 24,471,391 Number of Sequences: 59808 Number of extensions: 580182 Number of successful extensions: 1574 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 1451 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1572 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2443309836 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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