Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_G10
         (857 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  
SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_15603| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40)                   28   8.5  

>SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1616

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 38/121 (31%), Positives = 49/121 (40%), Gaps = 4/121 (3%)
 Frame = -3

Query: 591  ISAEDRRLVFCDRTPWRPYHRQKS----GCSYPDPTHRSLMLSSQICHRFVYLGQ*WLVH 424
            +SAE+    FCD    R   R KS      S   P+ R+L  SS I   F  L    +V 
Sbjct: 1160 LSAENDMPGFCDTVVERIVKRIKSISRNSSSEICPSCRALETSSLI--EFFLLSAKTIVS 1217

Query: 423  SCSPSLGVRRSLVLSPPGPKTLVP*A*PVSLPRSSLKISLL*PAFPKSPSSFCPKVPKTL 244
            SC  +L VR    +  P P T    A P S P +   I L      K+P+      P  +
Sbjct: 1218 SCLNTLLVRPLETIPAPTPTTPTSPATPASGPLTRTPILL-----KKTPTPALESAPAAM 1272

Query: 243  P 241
            P
Sbjct: 1273 P 1273


>SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1297

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/42 (40%), Positives = 19/42 (45%)
 Frame = +2

Query: 230 QMGGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYG 355
           Q G G  FGT      GLFG AG N        G +TG  +G
Sbjct: 48  QTGFGSGFGTTQTTGTGLFGAAGTNTGTGLFGGGTVTGSMFG 89


>SB_15603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 35/123 (28%), Positives = 50/123 (40%), Gaps = 5/123 (4%)
 Frame = -2

Query: 520 WVFLSRSHTPEPDAVIPDLPPICLFRSIV-----ACAFLFAQSRRPP*FGAVASRS*NSG 356
           W+FL+R+ T   +       P   FR+ V     AC   F+ +  P    +   +  N G
Sbjct: 34  WLFLNRASTANSERTAIASGPRSNFRAAVAYCRHACPLPFSSTHTPTYTLSFLGQEGNRG 93

Query: 355 AVSLTG*FAAVVIKDLSVVTSFSKESIIVLSQSAKDLASPHLFVPSDVTRVSPLRIAR*S 176
            +S  G        DL+V+ +  K S   L   AK    P  FV SD  R+  L  A  S
Sbjct: 94  TLSKIG-------VDLTVLIASQKAS-AKLESMAKRYEQPTPFVGSDERRLWHLNRAFGS 145

Query: 175 SNL 167
           S +
Sbjct: 146 SRI 148


>SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40)
          Length = 933

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/64 (21%), Positives = 28/64 (43%)
 Frame = +2

Query: 173 TRSAGNPQGRHPRDVTWDKQMGGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAY 352
           +R++ +     P+  +W ++     VF       D  F + G+ R+  ++ RG+    A 
Sbjct: 689 SRNSSSTSESSPKRFSWSQENSKDVVFAGPDLPADNPFNREGFGRQSMSEKRGRAAVDAK 748

Query: 353 GTRV 364
            T V
Sbjct: 749 KTEV 752


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,471,391
Number of Sequences: 59808
Number of extensions: 580182
Number of successful extensions: 1574
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1572
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)