Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_G10
         (857 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit...    33   0.24 
At3g24540.1 68416.m03082 protein kinase family protein contains ...    31   0.74 
At3g50580.1 68416.m05532 proline-rich family protein contains pr...    31   1.3  
At5g45113.1 68418.m05537 mitochondrial transcription termination...    29   4.0  
At2g16630.1 68415.m01909 proline-rich family protein contains pr...    29   4.0  
At3g46630.1 68416.m05062 expressed protein contains similarity t...    28   6.9  
At1g63700.1 68414.m07209 protein kinase, putative contains prote...    28   6.9  
At5g26080.1 68418.m03103 proline-rich family protein contains pr...    28   9.1  
At5g01790.1 68418.m00098 expressed protein                             28   9.1  
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    28   9.1  

>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
           family protein low similarity to extensin [Volvox
           carteri] GI:21992
          Length = 312

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 29/73 (39%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
 Frame = -3

Query: 423 SCSPSLGVRRSLVLSPPGPKTLVP*A*PVSLPRSSLKISLL*PAFPKSPSSFCPK--VPK 250
           S SPS     SL  S P P +L P + P   P SS  +S L P+   SP S  P    P 
Sbjct: 42  SSSPSSAPPSSLSPSSPPPLSLSP-SSPPPPPPSSSPLSSLSPSLSPSPPSSSPSSAPPS 100

Query: 249 TL----PPPICLS 223
           +L    PPP+ LS
Sbjct: 101 SLSPSSPPPLSLS 113


>At3g24540.1 68416.m03082 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 509

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = -3

Query: 402 VRRSLVLSPPGPKTLVP*---A*PVSLPRSSLKISLL*PAFPKSPSSFC-PKVPKTLPPP 235
           +  S   SPP P+  VP    + P   P++ + +SL  P  P+SPS+   P++    PPP
Sbjct: 34  ITMSSASSPPPPQVFVPEPLFSEPPPPPKAPVNVSLSPPPPPRSPSTSTPPRLGNRNPPP 93


>At3g50580.1 68416.m05532 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 265

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 22/51 (43%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
 Frame = -3

Query: 381 SPPGPKTLVP*A*PVSLPRSSLKISLL*PAFPKSPS--SFCPKVPKTLPPP 235
           SPP     VP   P   P      SL  PA  KSPS  S  P  PK  PPP
Sbjct: 109 SPPSLTPFVPHPTPKKSPSPPPTPSLPPPAPKKSPSTPSLPPPTPKKSPPP 159


>At5g45113.1 68418.m05537 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 414

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/71 (23%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
 Frame = -1

Query: 704 LRNFDLDKQSIITYMNXKKTNYWQRLLLSVEVITNHGGSLLK-TDVWSFVTELLGDHTTG 528
           L+  +L    +  Y++ +KT  W+R+L ++E++   G    K +++     +L+G+ T+G
Sbjct: 79  LKGLNLGCDWLARYLSVRKTYNWRRILETMELLEKVGFKEKKLSNLLKAYPDLVGE-TSG 137

Query: 527 RKVGVLIQIPH 495
            K  ++ +  H
Sbjct: 138 NKAYIMFEKFH 148


>At2g16630.1 68415.m01909 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 359

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = -3

Query: 294 AFPKSPSSFCPKVP--KTLPPP 235
           A P  PSSFCPK P    +PPP
Sbjct: 139 AQPVQPSSFCPKPPTAPVMPPP 160


>At3g46630.1 68416.m05062 expressed protein contains similarity to
           defective chloroplasts and leaves protein SP:Q42463 from
           [Lycopersicon esculentum]
          Length = 207

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -3

Query: 642 LLAKIIVKC*GDHQSWRISAEDRRLVFCDRTPWRPYHRQKSGC 514
           LLAK I+         R+  ED ++V     P+ PY + K GC
Sbjct: 103 LLAKEILHSDRYLDGERLDFEDEKIVMEKLLPYHPYSKDKIGC 145


>At1g63700.1 68414.m07209 protein kinase, putative contains protein
           kinase domain, Pfam:PF00069; similar to MEK kinase
           (MAP3Ka) [Arabidopsis thaliana] gi|4204912|gb|AAD10848
          Length = 883

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 662 MNXKKTNYWQRLLLSVEVITNHGGSLLKTDVWSFVTELLGDHTT 531
           ++ K + YW    ++ EVI N  GS L  D+WS    +L   TT
Sbjct: 557 LSFKGSPYW----MAPEVIKNSNGSNLAVDIWSLGCTVLEMATT 596


>At5g26080.1 68418.m03103 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 141

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/52 (34%), Positives = 21/52 (40%)
 Frame = -3

Query: 387 VLSPPGPKTLVP*A*PVSLPRSSLKISLL*PAFPKSPSSFCPKVPKTLPPPI 232
           + SPP P    P   P   P  S  +     AFP  P  + P  P   PPPI
Sbjct: 39  IYSPPPPPYRSPVTIPPPPPVYSRPV-----AFPPPPPIYSPPPPPIYPPPI 85


>At5g01790.1 68418.m00098 expressed protein 
          Length = 188

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 297 PAFPKSPSSFCPKVPKTLPPP 235
           P  PK PSS  P +P   PPP
Sbjct: 63  PGTPKHPSSELPTLPPLTPPP 83


>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = -3

Query: 417 SPSLGVRRSLVLSPPGPKTLVP*A*PVSLPRSSLKISLL*PAF--PKSPSSFCPKVPKTL 244
           SPS     S + SPP P T      P+S  ++S  I +  P F  P  PSS  P +P  +
Sbjct: 548 SPSSPTPSSPIPSPPTPSTPPT---PISPGQNSPPI-IPSPPFTGPSPPSSPSPPLPPVI 603

Query: 243 P-PPI 232
           P PPI
Sbjct: 604 PSPPI 608


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,975,714
Number of Sequences: 28952
Number of extensions: 393378
Number of successful extensions: 1026
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)