Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_G09
         (878 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati...    29   4.4  
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr...    29   4.4  

>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
           protein protein.
          Length = 1439

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
 Frame = +3

Query: 228 LAGMATTTSTLKLIK*MKSLGRDGAKAGNGVHERVYTXIGRDTRNAVDHD--LLHGKXPQ 401
           L  + T +  L  I  ++S   DG   G+ V E   +  GR   NAV +   LLH     
Sbjct: 539 LIELNTESEMLSWISVLQSSSEDGIATGSSVDENELSTTGRHNNNAVSNSSALLHNSQSI 598

Query: 402 ETLIERTITLIPILQ*LSSE 461
            +L   + +     + L+S+
Sbjct: 599 ASLASSSCSTATTSEFLNSQ 618


>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical
           protein C04D8.1 protein.
          Length = 1317

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
 Frame = +3

Query: 228 LAGMATTTSTLKLIK*MKSLGRDGAKAGNGVHERVYTXIGRDTRNAVDHD--LLHGKXPQ 401
           L  + T +  L  I  ++S   DG   G+ V E   +  GR   NAV +   LLH     
Sbjct: 417 LIELNTESEMLSWISVLQSSSEDGIATGSSVDENELSTTGRHNNNAVSNSSALLHNSQSI 476

Query: 402 ETLIERTITLIPILQ*LSSE 461
            +L   + +     + L+S+
Sbjct: 477 ASLASSSCSTATTSEFLNSQ 496


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,473,038
Number of Sequences: 27780
Number of extensions: 227516
Number of successful extensions: 435
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)