Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_G09
         (878 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20900.1 68414.m02617 DNA-binding protein-related contains Pf...    29   3.1  
At2g04620.1 68415.m00470 cation efflux family protein potential ...    28   7.2  
At1g16390.1 68414.m01960 organic cation transporter-related low ...    28   7.2  

>At1g20900.1 68414.m02617 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 311

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -1

Query: 209 NLLRHQRFHSRVRAHAHVRL-DQHQRQYPSRDEEGLHSCGHCEYEASNFQHHVQ 51
           NL R +  H +++    + L DQH  Q+    ++   S    E + SN  HH Q
Sbjct: 17  NLFRPEIHHQQLQPQGGINLIDQHHHQHQQHQQQQQPSDDSRESDHSNKDHHQQ 70


>At2g04620.1 68415.m00470 cation efflux family protein potential
           member of the cation diffusion facilitator (CDF) family,
           or cation efflux (CE) family, see PMID:11500563
          Length = 798

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/64 (26%), Positives = 23/64 (35%)
 Frame = -1

Query: 251 CCRSHARQDQD*RPNLLRHQRFHSRVRAHAHVRLDQHQRQYPSRDEEGLHSCGHCEYEAS 72
           C  SH+ Q      N   HQ   S      H   D H+ +     +   HS  H ++E  
Sbjct: 554 CTHSHSHQSHS-HKNEEHHQHSDSHKHEEHHQHSDSHKHEEHHEHDHHHHSHSH-KHEEC 611

Query: 71  NFQH 60
           N  H
Sbjct: 612 NHNH 615


>At1g16390.1 68414.m01960 organic cation transporter-related low
           similarity to Organic cation/carnitine transporter 2
           (Solute carrier family 22, member 5) (High-affinity
           sodium-dependent carnitine cotransporter) from {Homo
           sapiens} SP|O76082, {Rattus norvegicus} SP|O70594;
           contains Pfam profile PF00083: major facilitator
           superfamily protein
          Length = 518

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +3

Query: 42  LSXLNMVLKITCLILAVAATVQAFLISAWVLALV 143
           L   NM+L ++CLI+++++ + AF  S WV A +
Sbjct: 147 LGRKNMLL-LSCLIMSLSSMLTAFSTSIWVYAFL 179


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,554,166
Number of Sequences: 28952
Number of extensions: 208271
Number of successful extensions: 346
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2067932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)