BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_G09 (878 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g20900.1 68414.m02617 DNA-binding protein-related contains Pf... 29 3.1 At2g04620.1 68415.m00470 cation efflux family protein potential ... 28 7.2 At1g16390.1 68414.m01960 organic cation transporter-related low ... 28 7.2 >At1g20900.1 68414.m02617 DNA-binding protein-related contains Pfam domain PF03479: Domain of unknown function (DUF296), found in AT-hook motifs Pfam:PF02178 Length = 311 Score = 29.5 bits (63), Expect = 3.1 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Frame = -1 Query: 209 NLLRHQRFHSRVRAHAHVRL-DQHQRQYPSRDEEGLHSCGHCEYEASNFQHHVQ 51 NL R + H +++ + L DQH Q+ ++ S E + SN HH Q Sbjct: 17 NLFRPEIHHQQLQPQGGINLIDQHHHQHQQHQQQQQPSDDSRESDHSNKDHHQQ 70 >At2g04620.1 68415.m00470 cation efflux family protein potential member of the cation diffusion facilitator (CDF) family, or cation efflux (CE) family, see PMID:11500563 Length = 798 Score = 28.3 bits (60), Expect = 7.2 Identities = 17/64 (26%), Positives = 23/64 (35%) Frame = -1 Query: 251 CCRSHARQDQD*RPNLLRHQRFHSRVRAHAHVRLDQHQRQYPSRDEEGLHSCGHCEYEAS 72 C SH+ Q N HQ S H D H+ + + HS H ++E Sbjct: 554 CTHSHSHQSHS-HKNEEHHQHSDSHKHEEHHQHSDSHKHEEHHEHDHHHHSHSH-KHEEC 611 Query: 71 NFQH 60 N H Sbjct: 612 NHNH 615 >At1g16390.1 68414.m01960 organic cation transporter-related low similarity to Organic cation/carnitine transporter 2 (Solute carrier family 22, member 5) (High-affinity sodium-dependent carnitine cotransporter) from {Homo sapiens} SP|O76082, {Rattus norvegicus} SP|O70594; contains Pfam profile PF00083: major facilitator superfamily protein Length = 518 Score = 28.3 bits (60), Expect = 7.2 Identities = 13/34 (38%), Positives = 23/34 (67%) Frame = +3 Query: 42 LSXLNMVLKITCLILAVAATVQAFLISAWVLALV 143 L NM+L ++CLI+++++ + AF S WV A + Sbjct: 147 LGRKNMLL-LSCLIMSLSSMLTAFSTSIWVYAFL 179 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,554,166 Number of Sequences: 28952 Number of extensions: 208271 Number of successful extensions: 346 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 343 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 346 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 2067932800 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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