Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_G08
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 616 PPPPXXFFFXXPPPPPP 566
           PPPP       PPPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPP 780



 Score = 27.9 bits (59), Expect = 1.8
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 616 PPPPXXFFFXXPPPPPP 566
           PPPP       PPPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPP 781



 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = -3

Query: 613 PPPXXFFFXXPPPPPPXFXXXXXXXXXPP 527
           PPP       PPPPPP           PP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = -3

Query: 616 PPPPXXFFFXXPPPPPPXFXXXXXXXXXPP 527
           PPP        PPPPPP           PP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 616 PPPPXXFFFXXPPPPPP 566
           P PP       PPPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPP 766


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 616 PPPPXXFFFXXPPPPPP 566
           PPPP  F     PPPPP
Sbjct: 12  PPPPPGFEPPSQPPPPP 28



 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 616 PPPPXXFFFXXPPPPPP 566
           PPPP       PPPPPP
Sbjct: 13  PPPPGFEPPSQPPPPPP 29



 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 3/22 (13%)
 Frame = -3

Query: 616 PPPPXXFF---FXXPPPPPPXF 560
           PPPP   F      PPPPPP +
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGY 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,459,026
Number of Sequences: 5004
Number of extensions: 14399
Number of successful extensions: 63
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)