BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_G08 (795 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 1.3 SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 3.1 >SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||Manual Length = 1461 Score = 28.3 bits (60), Expect = 1.3 Identities = 10/17 (58%), Positives = 10/17 (58%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPP 566 PPPP PPPPPP Sbjct: 764 PPPPPGVAGAGPPPPPP 780 Score = 27.9 bits (59), Expect = 1.8 Identities = 10/17 (58%), Positives = 10/17 (58%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPP 566 PPPP PPPPPP Sbjct: 765 PPPPGVAGAGPPPPPPP 781 Score = 27.1 bits (57), Expect = 3.1 Identities = 11/29 (37%), Positives = 11/29 (37%) Frame = -3 Query: 613 PPPXXFFFXXPPPPPPXFXXXXXXXXXPP 527 PPP PPPPPP PP Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780 Score = 26.2 bits (55), Expect = 5.4 Identities = 11/30 (36%), Positives = 11/30 (36%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPPXFXXXXXXXXXPP 527 PPP PPPPPP PP Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781 Score = 25.4 bits (53), Expect = 9.4 Identities = 9/17 (52%), Positives = 9/17 (52%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPP 566 P PP PPPPPP Sbjct: 750 PVPPPAPIMGGPPPPPP 766 >SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosaccharomyces pombe|chr 1|||Manual Length = 2363 Score = 27.1 bits (57), Expect = 3.1 Identities = 10/17 (58%), Positives = 10/17 (58%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPP 566 PPPP F PPPPP Sbjct: 12 PPPPPGFEPPSQPPPPP 28 Score = 26.2 bits (55), Expect = 5.4 Identities = 10/17 (58%), Positives = 10/17 (58%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPP 566 PPPP PPPPPP Sbjct: 13 PPPPGFEPPSQPPPPPP 29 Score = 25.8 bits (54), Expect = 7.1 Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 3/22 (13%) Frame = -3 Query: 616 PPPPXXFF---FXXPPPPPPXF 560 PPPP F PPPPPP + Sbjct: 11 PPPPPPGFEPPSQPPPPPPPGY 32 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,459,026 Number of Sequences: 5004 Number of extensions: 14399 Number of successful extensions: 63 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 54 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 387388442 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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