BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_G08 (795 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) 33 0.27 SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30) 32 0.47 SB_812| Best HMM Match : FH2 (HMM E-Value=0) 32 0.47 SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48) 31 1.1 SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4) 31 1.1 SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4 SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5 SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 29 5.7 SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6 SB_38223| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6 SB_9057| Best HMM Match : Nucleoplasmin (HMM E-Value=3.6) 28 7.6 SB_56047| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6 SB_44752| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6 SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 28 7.6 >SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) Length = 768 Score = 33.1 bits (72), Expect = 0.27 Identities = 14/34 (41%), Positives = 14/34 (41%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPPXFXXXXXXXXXPPXXGG 515 PPPP PPPPPP PP GG Sbjct: 665 PPPPGGQAGGAPPPPPPPLPGGAAPPPPPPIGGG 698 Score = 30.3 bits (65), Expect = 1.9 Identities = 11/19 (57%), Positives = 11/19 (57%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPPXF 560 PPPP PPPPPP F Sbjct: 689 PPPPPPIGGGAPPPPPPGF 707 Score = 28.3 bits (60), Expect = 7.6 Identities = 13/34 (38%), Positives = 13/34 (38%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPPXFXXXXXXXXXPPXXGG 515 PPPP PPPPP PP GG Sbjct: 664 PPPPPGGQAGGAPPPPPPPLPGGAAPPPPPPIGG 697 >SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30) Length = 739 Score = 32.3 bits (70), Expect = 0.47 Identities = 12/19 (63%), Positives = 12/19 (63%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPPXF 560 PPPP F PPPPPP F Sbjct: 200 PPPPPGFPGGAPPPPPPPF 218 >SB_812| Best HMM Match : FH2 (HMM E-Value=0) Length = 1430 Score = 32.3 bits (70), Expect = 0.47 Identities = 13/30 (43%), Positives = 13/30 (43%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPPXFXXXXXXXXXPP 527 PPPP F PPPPPP PP Sbjct: 654 PPPPGGGMFPPPPPPPPGGGVPGPPKPPPP 683 Score = 29.1 bits (62), Expect = 4.3 Identities = 13/34 (38%), Positives = 13/34 (38%) Frame = -3 Query: 628 FFXXPPPPXXFFFXXPPPPPPXFXXXXXXXXXPP 527 F PPPP PPPPPP PP Sbjct: 649 FGGIPPPPPGGGMFPPPPPPPPGGGVPGPPKPPP 682 >SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48) Length = 341 Score = 31.1 bits (67), Expect = 1.1 Identities = 14/36 (38%), Positives = 14/36 (38%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPPXFXXXXXXXXXPPXXGGXG 509 PPPP PPPPPP PP G G Sbjct: 293 PPPPADGSAPAPPPPPPPGGAPPPPPPPPPPPPGDG 328 >SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4) Length = 330 Score = 31.1 bits (67), Expect = 1.1 Identities = 12/22 (54%), Positives = 12/22 (54%) Frame = -3 Query: 625 FXXPPPPXXFFFXXPPPPPPXF 560 F PPPP PPPPPP F Sbjct: 309 FAPPPPPPEPTSELPPPPPPPF 330 Score = 29.5 bits (63), Expect = 3.3 Identities = 11/20 (55%), Positives = 11/20 (55%) Frame = -3 Query: 625 FXXPPPPXXFFFXXPPPPPP 566 F PPPP F PPPP P Sbjct: 299 FQPPPPPPTDFAPPPPPPEP 318 Score = 28.7 bits (61), Expect = 5.7 Identities = 11/21 (52%), Positives = 11/21 (52%) Frame = -3 Query: 628 FFXXPPPPXXFFFXXPPPPPP 566 F PPPP PPPPPP Sbjct: 309 FAPPPPPPEPTSELPPPPPPP 329 >SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 476 Score = 30.7 bits (66), Expect = 1.4 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = -3 Query: 625 FXXPPPPXXFFFXXPPPPPP 566 + PPPP F PPPPPP Sbjct: 423 YIPPPPPGFPQFQPPPPPPP 442 >SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 831 Score = 29.9 bits (64), Expect = 2.5 Identities = 12/30 (40%), Positives = 13/30 (43%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPPXFXXXXXXXXXPP 527 PPPP + PPPPPP PP Sbjct: 53 PPPPRFYDNDIPPPPPPRRGFYDDYPPPPP 82 Score = 29.5 bits (63), Expect = 3.3 Identities = 12/30 (40%), Positives = 13/30 (43%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPPXFXXXXXXXXXPP 527 PPPP F+ PPPPP PP Sbjct: 52 PPPPPRFYDNDIPPPPPPRRGFYDDYPPPP 81 Score = 29.5 bits (63), Expect = 3.3 Identities = 10/17 (58%), Positives = 11/17 (64%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPP 566 PPP F+ PPPPPP Sbjct: 67 PPPRRGFYDDYPPPPPP 83 >SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) Length = 305 Score = 28.7 bits (61), Expect = 5.7 Identities = 13/36 (36%), Positives = 13/36 (36%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPPXFXXXXXXXXXPPXXGGXG 509 PPPP PPPPPP PP G Sbjct: 127 PPPPTSPATRAPPPPPPIAPATGGPPPPPPIAPATG 162 Score = 28.3 bits (60), Expect = 7.6 Identities = 12/30 (40%), Positives = 12/30 (40%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPPXFXXXXXXXXXPP 527 PPPP PPPPPP PP Sbjct: 140 PPPPIAPATGGPPPPPPIAPATGGPPPPPP 169 >SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2143 Score = 28.3 bits (60), Expect = 7.6 Identities = 10/17 (58%), Positives = 10/17 (58%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPP 566 PPPP PPPPPP Sbjct: 86 PPPPPASNVPAPPPPPP 102 >SB_38223| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 201 Score = 28.3 bits (60), Expect = 7.6 Identities = 10/17 (58%), Positives = 10/17 (58%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPP 566 PPPP PPPPPP Sbjct: 93 PPPPPQLENDFPPPPPP 109 >SB_9057| Best HMM Match : Nucleoplasmin (HMM E-Value=3.6) Length = 479 Score = 28.3 bits (60), Expect = 7.6 Identities = 10/17 (58%), Positives = 10/17 (58%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPP 566 PPPP PPPPPP Sbjct: 425 PPPPPPAPLPPPPPPPP 441 >SB_56047| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 440 Score = 28.3 bits (60), Expect = 7.6 Identities = 10/17 (58%), Positives = 10/17 (58%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPP 566 PPPP PPPPPP Sbjct: 304 PPPPLPAGVPAPPPPPP 320 >SB_44752| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 421 Score = 28.3 bits (60), Expect = 7.6 Identities = 10/17 (58%), Positives = 10/17 (58%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPP 566 PPPP PPPPPP Sbjct: 199 PPPPLDDLDDLPPPPPP 215 >SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) Length = 514 Score = 28.3 bits (60), Expect = 7.6 Identities = 10/17 (58%), Positives = 10/17 (58%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPP 566 PPPP PPPPPP Sbjct: 315 PPPPPARMGTAPPPPPP 331 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,493,186 Number of Sequences: 59808 Number of extensions: 151008 Number of successful extensions: 1057 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 267 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 830 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2191792647 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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