BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_G08 (795 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 31 1.3 U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.3 U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.3 AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.3 Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 2.2 U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 2.2 AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical ... 30 2.2 AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 29 2.9 Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 3.8 AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 3.8 AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 3.8 AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 3.8 Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 29 5.1 AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 5.1 U58748-9|AAB52969.3| 542|Caenorhabditis elegans Hypothetical pr... 28 6.7 U58748-8|AAM97986.1| 497|Caenorhabditis elegans Hypothetical pr... 28 6.7 U58748-7|AAM97987.1| 399|Caenorhabditis elegans Hypothetical pr... 28 6.7 U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 28 8.9 U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (gr... 28 8.9 >Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical protein ZC168.5 protein. Length = 172 Score = 30.7 bits (66), Expect = 1.3 Identities = 13/36 (36%), Positives = 14/36 (38%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPPXFXXXXXXXXXPPXXGGXG 509 PPPP + PPPPPP P G G Sbjct: 43 PPPPCGGGYEAPPPPPPPSYAGGPSYAGPSYAGSYG 78 >U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect protein 1, isoformb protein. Length = 1437 Score = 30.7 bits (66), Expect = 1.3 Identities = 11/17 (64%), Positives = 11/17 (64%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPP 566 PPPP F PPPPPP Sbjct: 773 PPPPPGGFKGGPPPPPP 789 Score = 30.7 bits (66), Expect = 1.3 Identities = 11/17 (64%), Positives = 11/17 (64%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPP 566 PPPP F PPPPPP Sbjct: 774 PPPPGGFKGGPPPPPPP 790 Score = 28.3 bits (60), Expect = 6.7 Identities = 13/33 (39%), Positives = 13/33 (39%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPPXFXXXXXXXXXPPXXG 518 PPPP PPPPPP PP G Sbjct: 759 PPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPG 791 >U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect protein 1, isoforma protein. Length = 1435 Score = 30.7 bits (66), Expect = 1.3 Identities = 11/17 (64%), Positives = 11/17 (64%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPP 566 PPPP F PPPPPP Sbjct: 773 PPPPPGGFKGGPPPPPP 789 Score = 30.7 bits (66), Expect = 1.3 Identities = 11/17 (64%), Positives = 11/17 (64%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPP 566 PPPP F PPPPPP Sbjct: 774 PPPPGGFKGGPPPPPPP 790 Score = 28.3 bits (60), Expect = 6.7 Identities = 13/33 (39%), Positives = 13/33 (39%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPPXFXXXXXXXXXPPXXG 518 PPPP PPPPPP PP G Sbjct: 759 PPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPG 791 >AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. Length = 1018 Score = 30.7 bits (66), Expect = 1.3 Identities = 11/17 (64%), Positives = 11/17 (64%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPP 566 PPPP F PPPPPP Sbjct: 356 PPPPPGGFKGGPPPPPP 372 Score = 30.7 bits (66), Expect = 1.3 Identities = 11/17 (64%), Positives = 11/17 (64%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPP 566 PPPP F PPPPPP Sbjct: 357 PPPPGGFKGGPPPPPPP 373 Score = 28.3 bits (60), Expect = 6.7 Identities = 13/33 (39%), Positives = 13/33 (39%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPPXFXXXXXXXXXPPXXG 518 PPPP PPPPPP PP G Sbjct: 342 PPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPG 374 >Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein C08B11.5 protein. Length = 388 Score = 29.9 bits (64), Expect = 2.2 Identities = 10/17 (58%), Positives = 11/17 (64%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPP 566 PPPP + PPPPPP Sbjct: 288 PPPPSSGMWPPPPPPPP 304 Score = 28.7 bits (61), Expect = 5.1 Identities = 10/17 (58%), Positives = 10/17 (58%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPP 566 PPPP PPPPPP Sbjct: 287 PPPPPSSGMWPPPPPPP 303 Score = 28.3 bits (60), Expect = 6.7 Identities = 11/30 (36%), Positives = 13/30 (43%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPPXFXXXXXXXXXPP 527 PPP + PPPPPP + PP Sbjct: 337 PPPGMRYPGGMPPPPPPRYPSAGPGMYPPP 366 >U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding protein protein. Length = 398 Score = 29.9 bits (64), Expect = 2.2 Identities = 10/17 (58%), Positives = 11/17 (64%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPP 566 PPPP + PPPPPP Sbjct: 298 PPPPSSGMWPPPPPPPP 314 Score = 28.7 bits (61), Expect = 5.1 Identities = 10/17 (58%), Positives = 10/17 (58%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPP 566 PPPP PPPPPP Sbjct: 297 PPPPPSSGMWPPPPPPP 313 Score = 28.3 bits (60), Expect = 6.7 Identities = 11/30 (36%), Positives = 13/30 (43%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPPXFXXXXXXXXXPP 527 PPP + PPPPPP + PP Sbjct: 347 PPPGMRYPGGMPPPPPPRYPSAGPGMYPPP 376 >AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical protein Y40B1A.5 protein. Length = 134 Score = 29.9 bits (64), Expect = 2.2 Identities = 9/16 (56%), Positives = 11/16 (68%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPP 569 PPPP ++ PPPPP Sbjct: 95 PPPPPPHYYTQPPPPP 110 >AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical protein Y48G9A.4 protein. Length = 1115 Score = 29.5 bits (63), Expect = 2.9 Identities = 10/17 (58%), Positives = 10/17 (58%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPP 566 PPPP PPPPPP Sbjct: 579 PPPPPPMLGGPPPPPPP 595 Score = 29.1 bits (62), Expect = 3.8 Identities = 10/17 (58%), Positives = 10/17 (58%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPP 566 PPPP PPPPPP Sbjct: 578 PPPPPPPMLGGPPPPPP 594 Score = 28.7 bits (61), Expect = 5.1 Identities = 13/34 (38%), Positives = 13/34 (38%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPPXFXXXXXXXXXPPXXGG 515 PPP PPPPPP PP GG Sbjct: 565 PPPLPQNLSGAPPPPPPPPPMLGGPPPPPPPPGG 598 >Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical protein T24B8.4 protein. Length = 866 Score = 29.1 bits (62), Expect = 3.8 Identities = 10/16 (62%), Positives = 10/16 (62%) Frame = -3 Query: 613 PPPXXFFFXXPPPPPP 566 PPP F PPPPPP Sbjct: 105 PPPPPMFGAPPPPPPP 120 Score = 28.3 bits (60), Expect = 6.7 Identities = 10/16 (62%), Positives = 10/16 (62%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPP 569 PPPP F PPPPP Sbjct: 84 PPPPPMFAGGIPPPPP 99 Score = 28.3 bits (60), Expect = 6.7 Identities = 10/16 (62%), Positives = 10/16 (62%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPP 569 PPPP F PPPPP Sbjct: 105 PPPPPMFGAPPPPPPP 120 >AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(q/n-rich)-domain-bearingprotein protein 75, isoform b protein. Length = 518 Score = 29.1 bits (62), Expect = 3.8 Identities = 14/34 (41%), Positives = 14/34 (41%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPPXFXXXXXXXXXPPXXGG 515 PPPP PPPPPP PP GG Sbjct: 289 PPPPRA---GSPPPPPPPRGSPPTGSLPPPQAGG 319 >AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(q/n-rich)-domain-bearingprotein protein 75, isoform c protein. Length = 539 Score = 29.1 bits (62), Expect = 3.8 Identities = 14/34 (41%), Positives = 14/34 (41%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPPXFXXXXXXXXXPPXXGG 515 PPPP PPPPPP PP GG Sbjct: 310 PPPPRA---GSPPPPPPPRGSPPTGSLPPPQAGG 340 >AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q/n-rich)-domain-bearingprotein protein 75, isoform a protein. Length = 524 Score = 29.1 bits (62), Expect = 3.8 Identities = 14/34 (41%), Positives = 14/34 (41%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPPXFXXXXXXXXXPPXXGG 515 PPPP PPPPPP PP GG Sbjct: 295 PPPPRA---GSPPPPPPPRGSPPTGSLPPPQAGG 325 >Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical protein F15B9.4 protein. Length = 1140 Score = 28.7 bits (61), Expect = 5.1 Identities = 10/17 (58%), Positives = 10/17 (58%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPP 566 PPPP PPPPPP Sbjct: 540 PPPPVGMANGGPPPPPP 556 >AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical protein F59E12.9 protein. Length = 1621 Score = 28.7 bits (61), Expect = 5.1 Identities = 10/17 (58%), Positives = 10/17 (58%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPP 566 PPPP PPPPPP Sbjct: 1345 PPPPSDDLTPVPPPPPP 1361 >U58748-9|AAB52969.3| 542|Caenorhabditis elegans Hypothetical protein ZK180.5a protein. Length = 542 Score = 28.3 bits (60), Expect = 6.7 Identities = 10/19 (52%), Positives = 11/19 (57%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPPXF 560 P PP + PPPPPP F Sbjct: 56 PRPPIGYGAPPPPPPPPAF 74 >U58748-8|AAM97986.1| 497|Caenorhabditis elegans Hypothetical protein ZK180.5b protein. Length = 497 Score = 28.3 bits (60), Expect = 6.7 Identities = 10/19 (52%), Positives = 11/19 (57%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPPXF 560 P PP + PPPPPP F Sbjct: 56 PRPPIGYGAPPPPPPPPAF 74 >U58748-7|AAM97987.1| 399|Caenorhabditis elegans Hypothetical protein ZK180.5c protein. Length = 399 Score = 28.3 bits (60), Expect = 6.7 Identities = 10/19 (52%), Positives = 11/19 (57%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPPXF 560 P PP + PPPPPP F Sbjct: 56 PRPPIGYGAPPPPPPPPAF 74 >U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical protein R04E5.8a protein. Length = 997 Score = 27.9 bits (59), Expect = 8.9 Identities = 13/29 (44%), Positives = 14/29 (48%) Frame = +1 Query: 457 PPSPXXKKXXXGGXFSXPPXPPXRXEXXP 543 PP P +K GG S PP PP R P Sbjct: 123 PPPPPPRKSRAGGS-SPPPPPPPRVPRTP 150 >U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (grd related) protein22 protein. Length = 162 Score = 27.9 bits (59), Expect = 8.9 Identities = 10/17 (58%), Positives = 10/17 (58%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPP 566 PPPP PPPPPP Sbjct: 41 PPPPPMCGCAPPPPPPP 57 Score = 27.9 bits (59), Expect = 8.9 Identities = 10/17 (58%), Positives = 10/17 (58%) Frame = -3 Query: 616 PPPPXXFFFXXPPPPPP 566 PPPP PPPPPP Sbjct: 42 PPPPMCGCAPPPPPPPP 58 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,833,027 Number of Sequences: 27780 Number of extensions: 147162 Number of successful extensions: 1279 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 427 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1046 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1935274832 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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