BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_G06 (896 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot... 113 3e-26 SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote... 111 1e-25 SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual 28 2.1 SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 26 6.3 SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy... 26 8.4 SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 26 8.4 SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha... 26 8.4 >SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein L37a|Schizosaccharomyces pombe|chr 2|||Manual Length = 94 Score = 113 bits (272), Expect = 3e-26 Identities = 48/86 (55%), Positives = 66/86 (76%), Gaps = 2/86 (2%) Frame = +2 Query: 101 KRLELLGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSC--KRCKRT 274 K++ + GKYG RYGASLR+ V+K+EV QH++Y C FCG++ +KR+ GIW C K CK+ Sbjct: 6 KKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRNTVKRTAAGIWCCNGKGCKKV 65 Query: 275 VAGGAWVFSTTAASSCRSAVRRLREV 352 +AGGAW +T AA+S RS +RRLRE+ Sbjct: 66 LAGGAWTVTTAAATSARSTIRRLREM 91 >SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein L37a|Schizosaccharomyces pombe|chr 2|||Manual Length = 94 Score = 111 bits (268), Expect = 1e-25 Identities = 48/86 (55%), Positives = 65/86 (75%), Gaps = 2/86 (2%) Frame = +2 Query: 101 KRLELLGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSC--KRCKRT 274 K++ + GKYG RYGASLR+ V+K+EV QH++Y C FCG+ +KR+ GIW C K C +T Sbjct: 6 KKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRLTVKRTAAGIWKCSGKGCSKT 65 Query: 275 VAGGAWVFSTTAASSCRSAVRRLREV 352 +AGGAW +T AA+S RS +RRLRE+ Sbjct: 66 LAGGAWTVTTAAATSARSTIRRLREM 91 >SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual Length = 384 Score = 27.9 bits (59), Expect = 2.1 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = -3 Query: 279 ATVLLHRLQDQMPTQERFIASLPQNEQVYFACWVTS 172 +T +L ++ Q+ T F+A + +NE +FA W TS Sbjct: 69 STSVLRQVGWQLSTS--FVAHVSENENTFFAIWYTS 102 >SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster type |Schizosaccharomyces pombe|chr 1|||Manual Length = 782 Score = 26.2 bits (55), Expect = 6.3 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%) Frame = +2 Query: 182 QHAKYT-CSFCGKDAMKRSCVGIWSCKRCKR 271 +H K T C C + +K C +W C+ CK+ Sbjct: 15 RHRKITSCRECHR--LKLKCDRVWPCENCKK 43 >SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces pombe|chr 1|||Manual Length = 308 Score = 25.8 bits (54), Expect = 8.4 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = +1 Query: 19 HYREFLKICFSLSTF 63 H+ EFLK+C +STF Sbjct: 40 HHEEFLKVCDIISTF 54 >SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizosaccharomyces pombe|chr 2|||Manual Length = 438 Score = 25.8 bits (54), Expect = 8.4 Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = -3 Query: 132 VPYLPSNSNLFGTFGHFGK 76 + Y+PSN NLF H+G+ Sbjct: 352 IGYIPSNYNLFAFICHYGQ 370 >SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccharomyces pombe|chr 2|||Manual Length = 139 Score = 25.8 bits (54), Expect = 8.4 Identities = 11/30 (36%), Positives = 13/30 (43%) Frame = +2 Query: 191 KYTCSFCGKDAMKRSCVGIWSCKRCKRTVA 280 KY C CG + C I S RC + A Sbjct: 110 KYACQNCGTSYCSKGCEVIHSETRCMKVYA 139 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,841,125 Number of Sequences: 5004 Number of extensions: 51867 Number of successful extensions: 131 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 122 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 129 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 452494940 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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