Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_G06
         (896 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0070 + 27479654-27479672,27479864-27479922,27480339-274803...   119   4e-27
01_06_0260 - 27959188-27959251,27959342-27959424,27960220-279603...   119   4e-27
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332...    29   3.8  
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753...    29   6.6  
01_01_0668 - 5109476-5110112,5110196-5110439,5110519-5110917,511...    28   8.8  

>05_07_0070 +
           27479654-27479672,27479864-27479922,27480339-27480378,
           27480477-27480565,27481065-27481147,27481219-27481282
          Length = 117

 Score =  119 bits (286), Expect = 4e-27
 Identities = 51/83 (61%), Positives = 64/83 (77%)
 Frame = +2

Query: 101 KRLELLGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKRTVA 280
           K+  ++GKYGTRYGASLRK +KKMEV+QH+KY C FCGK A+KR  VGIW CK C +  A
Sbjct: 31  KKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKVKA 90

Query: 281 GGAWVFSTTAASSCRSAVRRLRE 349
           GGA+  +T +A + RS +RRLRE
Sbjct: 91  GGAYTMNTASAVTVRSTIRRLRE 113


>01_06_0260 -
           27959188-27959251,27959342-27959424,27960220-27960308,
           27960388-27960427,27960938-27960981,27961240-27961288
          Length = 122

 Score =  119 bits (286), Expect = 4e-27
 Identities = 51/83 (61%), Positives = 64/83 (77%)
 Frame = +2

Query: 101 KRLELLGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKRTVA 280
           K+  ++GKYGTRYGASLRK +KKMEV+QH+KY C FCGK A+KR  VGIW CK C +  A
Sbjct: 36  KKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKVKA 95

Query: 281 GGAWVFSTTAASSCRSAVRRLRE 349
           GGA+  +T +A + RS +RRLRE
Sbjct: 96  GGAYTMNTASAVTVRSTIRRLRE 118


>01_01_0446 +
           3321832-3322232,3322398-3322455,3322810-3323748,
           3324504-3324654,3324740-3324818,3325826-3325934
          Length = 578

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 787 GSPXPXGRGXGVXGXGXGRAXNXQTAFSRGXGD 689
           G+P P G G G  G G  ++      ++RG GD
Sbjct: 193 GAPSPAGGGGGGGGGGYNKSGGGGGGYNRGGGD 225


>07_03_0481 -
           18572206-18574314,18574591-18575185,18575304-18575371,
           18577344-18577458,18578179-18578333,18578673-18580621,
           18580691-18581372,18581550-18581621,18582558-18583199,
           18583301-18583402,18585011-18585100
          Length = 2192

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 209 CGKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSAVRRLR 346
           C    +KR+  G W C RC+        + +  A +S R   RR+R
Sbjct: 58  CLNPPLKRAPPGNWQCPRCRTKKVSLKLLDNADADTSKRERTRRMR 103


>01_01_0668 -
           5109476-5110112,5110196-5110439,5110519-5110917,
           5111390-5111668,5111886-5112257,5112371-5112475,
           5112832-5112909,5112990-5113199,5113287-5113406,
           5113508-5113606,5113685-5113750,5113914-5114141,
           5114216-5114521,5115324-5115381
          Length = 1066

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
 Frame = +3

Query: 687 ESPXPREKAVXXLXALPXPXPXTPXPRPFGCGE---PXXPXQRRXXRLSPXSGXTPXKNX 857
           ++P P       L  +  P    P  RP G G    P  P QR    + P +   P ++ 
Sbjct: 167 QAPAPSVARNPNLPIVQPPSVNNPPSRPIGSGNGVPPYPPPQRSLPAIPPSTSGVPRESV 226

Query: 858 XP 863
            P
Sbjct: 227 KP 228


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,063,705
Number of Sequences: 37544
Number of extensions: 354016
Number of successful extensions: 940
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)