Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_G06
         (896 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g60245.1 68416.m06733 60S ribosomal protein L37a (RPL37aC)         117   9e-27
At3g10950.1 68416.m01320 60S ribosomal protein L37a (RPL37aB) si...   117   1e-26
At3g48080.1 68416.m05242 lipase class 3 family protein / disease...    29   5.5  
At2g28240.1 68415.m03428 hydroxyproline-rich glycoprotein family...    28   9.7  

>At3g60245.1 68416.m06733 60S ribosomal protein L37a (RPL37aC)
          Length = 92

 Score =  117 bits (282), Expect = 9e-27
 Identities = 49/83 (59%), Positives = 64/83 (77%)
 Frame = +2

Query: 101 KRLELLGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKRTVA 280
           K++ ++GKYGTRYGAS+RK +KKMEV+QH+KY C FCGK  +KR  VGIW CK C +  A
Sbjct: 6   KKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDCGKVKA 65

Query: 281 GGAWVFSTTAASSCRSAVRRLRE 349
           GGA+  +T +A + RS +RRLRE
Sbjct: 66  GGAYTMNTASAVTVRSTIRRLRE 88


>At3g10950.1 68416.m01320 60S ribosomal protein L37a (RPL37aB)
           similar to putative 60S ribosomal protein L37a
           GB:AAD28753 [Gossypium hirsutum]
          Length = 92

 Score =  117 bits (281), Expect = 1e-26
 Identities = 50/83 (60%), Positives = 63/83 (75%)
 Frame = +2

Query: 101 KRLELLGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKRTVA 280
           K+  ++GKYGTRYGASLRK +KKMEV+QH KY C FCGK ++KR  VGIW CK C +  A
Sbjct: 6   KKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDCGKVKA 65

Query: 281 GGAWVFSTTAASSCRSAVRRLRE 349
           GGA+  +T +A + RS +RRLRE
Sbjct: 66  GGAYTMNTASAVTVRSTIRRLRE 88


>At3g48080.1 68416.m05242 lipase class 3 family protein / disease
           resistance protein-related similar to disease resistance
           protein/lipase homolog EDS1 GI:4454567; contains Pfam
           profile PF01764: Lipase
          Length = 629

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 72  EVYQNGQTYQKGWNYLANMAHVTVPLY 152
           E++  G T++K WN L +   +  PLY
Sbjct: 591 EIFLEGSTFRKWWNTLPDSHKIHAPLY 617


>At2g28240.1 68415.m03428 hydroxyproline-rich glycoprotein family
           protein 
          Length = 660

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +3

Query: 681 INESPXPREKAVXXLXALPXPXPXTPXPRP 770
           IN +P PR        +L  P   TP PRP
Sbjct: 558 INSTPHPRPSVTSKAISLQSPPCNTPQPRP 587


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,094,423
Number of Sequences: 28952
Number of extensions: 282532
Number of successful extensions: 787
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2110422216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)