Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_G05
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    28   2.1  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    27   4.8  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    27   4.8  
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac...    26   6.3  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    26   8.3  

>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 559 DRLLQRWYREGQXRDIGSEGPDQRDTSIS 473
           DR+  RW R+G   D+G +     D S+S
Sbjct: 445 DRIHNRWRRKGHDSDLGFDFETDEDASLS 473


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 193 LKLFRHEVSPVAALLGVCCDV 255
           L L R+ VSPV  +  VCCD+
Sbjct: 466 LVLSRNAVSPVPQVFEVCCDI 486


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 354 WPAPSKASTIPLPRELWLREGIG 286
           WP+ SK  T+ + R LW+ E  G
Sbjct: 92  WPSASKNDTLRVVRGLWMYEDTG 114


>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 340

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 732 FXNAPTPMGFWXQADKFXHLQXH 800
           F N PTP  FW + DK   +Q H
Sbjct: 277 FLNEPTPNKFWLECDKVT-IQPH 298


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 256 SARVPRALRVPDTFTQPQLPRQRDSRR 336
           +++V   L  P    QPQLP++ DS+R
Sbjct: 320 TSKVVLNLNDPKLLLQPQLPKKEDSQR 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,058,362
Number of Sequences: 5004
Number of extensions: 57863
Number of successful extensions: 145
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)