SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_G05
         (893 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0243 + 18629793-18630047,18630362-18630442,18631911-186323...    31   1.2  
07_03_0425 - 18070607-18070712,18071771-18072744                       31   1.6  
02_03_0016 + 13962086-13962326,13962529-13962614,13962652-139627...    31   1.6  
04_01_0020 + 307110-307809,308412-308476,309245-309544                 30   2.2  
06_01_0730 + 5370575-5370761,5371395-5371438,5372057-5372204,537...    30   2.9  
01_01_0942 + 7428384-7429536,7429623-7430335                           29   5.0  
01_01_0244 - 2005152-2005649,2006186-2006254                           29   5.0  
09_04_0581 - 18684273-18685814,18686156-18686200,18686393-18686683     29   6.6  
07_03_0418 + 17979504-17980964                                         29   6.6  
07_03_0415 + 17920383-17921843                                         29   6.6  

>06_03_0243 +
           18629793-18630047,18630362-18630442,18631911-18632305,
           18632471-18632926,18633156-18633247,18633528-18633683,
           18635657-18636057
          Length = 611

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -3

Query: 405 RPLVDSLGGNGVAHVTSWPAPSKASTIPLPREL 307
           R +V  LGG G     + PAP+ AST PLP  L
Sbjct: 338 RAVVVLLGGRGPEPAAASPAPAAASTPPLPLSL 370


>07_03_0425 - 18070607-18070712,18071771-18072744
          Length = 359

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +2

Query: 254 SARAYHVLCVFPIPSRSHNSLGKGIVDALLGAGHEVTW 367
           +A A HVL VFP P++ H +        LLGAG  VT+
Sbjct: 4   AAAAAHVL-VFPFPAQGHINCMMHFATGLLGAGLHVTF 40


>02_03_0016 +
           13962086-13962326,13962529-13962614,13962652-13962750,
           13963022-13963131,13964024-13964083,13964220-13964304
          Length = 226

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -2

Query: 595 GLRDDRVVFPADDRLLQRWYREGQXRDIGSEGPD 494
           G   + VV  ADD  + RWY +GQ  D   EG D
Sbjct: 93  GAEAESVVVFADDAAVVRWYSDGQAVDPRYEGDD 126


>04_01_0020 + 307110-307809,308412-308476,309245-309544
          Length = 354

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 251 TSARAYHVLCVFPIPSRSHNSLGKGIVDALLGAGHEVT 364
           T  RA  ++  F +P     ++  G++DAL G GH +T
Sbjct: 13  TCIRALELIFTFVVPMTLKATIKLGLLDALTGGGHALT 50


>06_01_0730 +
           5370575-5370761,5371395-5371438,5372057-5372204,
           5372289-5372397,5373349-5373863,5374571-5374808,
           5375296-5375560,5375740-5375844,5375950-5376015,
           5376562-5377020,5377267-5377464,5378149-5378211
          Length = 798

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
 Frame = +1

Query: 487 RVDQDLRCQYHXAVPLGTSAAAGDRQRE---IRRGRHGVLLQRCRGGLRGS----TSSAL 645
           RV+ D R  Y      G +A +    RE   +R  RHGV+  R   G +GS     S   
Sbjct: 104 RVENDQRRAYSHGQASGNTAESHGPNREFRVVRDSRHGVVENRPELGHKGSPNVKVSDRS 163

Query: 646 DPVVQRLHNAP 678
            PVVQ   N P
Sbjct: 164 VPVVQTGRNHP 174


>01_01_0942 + 7428384-7429536,7429623-7430335
          Length = 621

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -2

Query: 682 QVGHYGDAGQQDPGHLKYCPVARLGIVEEGLRDDRVVFPADDR 554
           +VG  GDAG  D G +K   +  LG + E L +   +F A  R
Sbjct: 208 EVGAGGDAGDDDGGRIKPQMLGYLGNLGEHLSNSLAIFAARGR 250


>01_01_0244 - 2005152-2005649,2006186-2006254
          Length = 188

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -3

Query: 405 RPLVDSLGGNGVAHVTSWPAPSKASTIPLPREL 307
           R +V  LGG G     + PAP+ AS  PLP  L
Sbjct: 92  RAVVVLLGGRGPEPAAASPAPAAASAPPLPLSL 124


>09_04_0581 - 18684273-18685814,18686156-18686200,18686393-18686683
          Length = 625

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 577 RGRHGVLLQRCRGGLRGSTSSALDPVVQRL 666
           R  H  LLQR  GG+ G  S++  P + RL
Sbjct: 38  RALHAALLQRGGGGVGGGASASRSPAIIRL 67


>07_03_0418 + 17979504-17980964
          Length = 486

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +2

Query: 254 SARAYHVLCVFPIPSRSHNSLGKGIVDALLGAGHEVTW 367
           +A A HVL VFP P + H +        L+GAG  VT+
Sbjct: 4   AAAAAHVL-VFPAPGQGHINCMMHFATGLVGAGLHVTF 40


>07_03_0415 + 17920383-17921843
          Length = 486

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +2

Query: 254 SARAYHVLCVFPIPSRSHNSLGKGIVDALLGAGHEVTW 367
           +A A HVL VFP P + H +        L+GAG  VT+
Sbjct: 4   AAAAAHVL-VFPAPGQGHINCMMHFATGLVGAGLHVTF 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,398,877
Number of Sequences: 37544
Number of extensions: 446273
Number of successful extensions: 1291
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1291
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -