Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_G04
(878 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0609 - 18929600-18929646,18929753-18929924,18930304-189304... 33 0.30
11_06_0416 + 23307984-23308281,23310083-23310900 31 0.92
01_04_0020 + 15142402-15143421 31 0.92
07_03_1769 + 29377784-29377878,29377993-29378180,29378340-293784... 30 2.8
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 3.7
12_02_1060 - 25752181-25754229 29 4.9
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 4.9
04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,184... 29 4.9
03_02_0097 + 5602912-5603293,5604599-5604676,5604935-5604963 29 4.9
08_02_1431 + 27057706-27057900,27058701-27058815,27059123-270591... 29 6.5
03_06_0189 + 32214702-32215154 29 6.5
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.6
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 28 8.6
>09_04_0609 -
18929600-18929646,18929753-18929924,18930304-18930498,
18930691-18930801,18930885-18931097,18931643-18931720,
18931894-18932001,18932175-18932316,18932413-18933761,
18934492-18935121
Length = 1014
Score = 33.1 bits (72), Expect = 0.30
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +2
Query: 539 PPDEHHKIDAQVRGGETRQDYKDTXXFPPGSSPXALSCSDPAALPDTCSXLSP 697
PPD H + +R T K T P SSP SCSD + + + C +P
Sbjct: 261 PPDAHQRSPRPIR---TPVSTKLTSDSLPASSPPTSSCSDYSTITEACQQRNP 310
>11_06_0416 + 23307984-23308281,23310083-23310900
Length = 371
Score = 31.5 bits (68), Expect = 0.92
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 531 APPPLTSITKSTLKSEVAKPDRTIKI 608
APPP TS+T ST+ +EV +KI
Sbjct: 11 APPPTTSVTASTIVAEVVSGSHVLKI 36
>01_04_0020 + 15142402-15143421
Length = 339
Score = 31.5 bits (68), Expect = 0.92
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +3
Query: 768 PPSWAVCTNPPFXPTAAPYPGNY 836
PPS AV +PP P APY G Y
Sbjct: 233 PPSNAVVAHPPVVPYGAPYGGGY 255
>07_03_1769 +
29377784-29377878,29377993-29378180,29378340-29378472,
29378580-29378715,29378996-29379072,29379162-29380830,
29380935-29381018,29381120-29381224,29381302-29381358
Length = 847
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -3
Query: 177 ITNFTNKAFFSLHSSCGLSKLINVSYHVWIQ*PSXKGDPRPRY 49
+ +TN +FF+ HS+C +KLI+ H+ Q P + +P +
Sbjct: 149 LKRYTNPSFFTSHSACS-TKLIHQRIHMAKQPPKLLLETKPTF 190
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 582 AKPDRTIKIPXRFPLEAPLXRSPVPTLPLYRIPVPXFLP 698
A PDR+++ R + +P P+LP R+PV FLP
Sbjct: 711 AHPDRSVRPVIRQAISVLRGEAPPPSLPA-RMPVATFLP 748
>12_02_1060 - 25752181-25754229
Length = 682
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 582 AKPDRTIKIPXRFPLEAPLXRSPVPTLPLYRIPVPXFLP 698
A PDR+++ R + +P P+LP R+PV FLP
Sbjct: 611 AHPDRSVRPVIRQAVSVLRGEAPPPSLPA-RMPVATFLP 648
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.1 bits (62), Expect = 4.9
Identities = 29/116 (25%), Positives = 38/116 (32%)
Frame = +3
Query: 525 PXAPPPLTSITKSTLKSEVAKPDRTIKIPXRFPLEAPLXRSPVPTLPLYRIPVPXFLPFG 704
P PPP I + +S P +P L P P P+LP +P P G
Sbjct: 602 PPPPPPPPPILPN--RSVPPPPPPPPPLPNHSVLPPPPPPPPPPSLPNRLVPPPPAPGIG 659
Query: 705 KAWPFLIAHAVXISVRXXGRSPPSWAVCTNPPFXPTAAPYPGNYRLESXRVXTTYP 872
+P R R+P A + P P P P R V + P
Sbjct: 660 NKFP--APPPPPPPPRSSSRTPTGAATSSKGPPPPPPPPLPPANRTNGPGVPSAPP 713
>04_01_0162 +
1845295-1846317,1846430-1846565,1848436-1848626,
1848780-1848887,1849001-1849204,1849294-1849525,
1849602-1849751,1849830-1850007,1850416-1850519,
1850611-1850933,1851274-1851459,1851672-1851899
Length = 1020
Score = 29.1 bits (62), Expect = 4.9
Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
Frame = +3
Query: 474 RPAKGQ--EP*KGRVAGVFPXAPPPLTSITKSTLKSEVAKPDRTIKIPXRFPLEAPLXRS 647
RP +G P V G APPP + S ++ P + P AP +
Sbjct: 9 RPPQGVPGRPVSAFVPGAATAAPPPSSFGAASAPRAPFVPPPQAAASPA-----APFAAA 63
Query: 648 PVPTLPLYRIPVPXFLPFGKAWP 716
P + YR P P PFG P
Sbjct: 64 PPAAIAGYRGPPPPQRPFGAGPP 86
Score = 28.3 bits (60), Expect = 8.6
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Frame = +3
Query: 621 PLEAPLXRSPVPTLPLYRIPVPXFL-PFGKAWP-FLIAHAVXISVRXXGRSPPSWAVCTN 794
P + P +P P+ + VP PF A P F ++ S G +PPS V
Sbjct: 141 PSQGPFGTAPPPSQGPFAASVPPSQGPFASAQPPFRPPPSLVQSPTASGMAPPSAYVRPP 200
Query: 795 PPFXPTAAPYPGNY 836
PP P G Y
Sbjct: 201 PPVQSQPPPMQGFY 214
>03_02_0097 + 5602912-5603293,5604599-5604676,5604935-5604963
Length = 162
Score = 29.1 bits (62), Expect = 4.9
Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +3
Query: 531 APPP--LTSITKSTLKSEVAKPDRTIKIPXRFPLEAPLXRSPVPTLPLYRIPVP 686
APP + S+T T + P R IP PL A L RSP PL IP P
Sbjct: 13 APPSAVIASLTHRTFVVVASLPRRPSVIP---PLRAALSRSPRHPSPLEPIPPP 63
>08_02_1431 +
27057706-27057900,27058701-27058815,27059123-27059170,
27059272-27059524,27059689-27059776,27059883-27059948,
27060335-27060403,27060492-27060597,27060639-27060793,
27061208-27061537
Length = 474
Score = 28.7 bits (61), Expect = 6.5
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +3
Query: 507 RVAGVFPXAPPPLTSITKSTLKSEVAKPD-RTIKI-PXRF 620
R GVF P P TS ++ L SEVAK + TI I P +F
Sbjct: 232 RPGGVFIMEPQPWTSYRRNRLVSEVAKENFNTILIHPDKF 271
>03_06_0189 + 32214702-32215154
Length = 150
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = +3
Query: 513 AGVFPXAP--PPLTSITKSTLKSEVAKPDRTIK-IPXRFPLEAPLXRSPVPTLPLYRIPV 683
A P P P + ++ K +L A P T+ +P P + P+P++P +P+
Sbjct: 82 AAALPPMPAVPAIPAVPKVSLPPMPAVPAVTLPPMPAGIPAVPAVTLPPMPSIPTVNVPM 141
Query: 684 PXFLP 698
P P
Sbjct: 142 PFQAP 146
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +1
Query: 292 NESAN---ARGEAVCVLGALPLPRSLTRCAR 375
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 743 DTYSVSYEKGPRFPEXEKGRNRYP 672
D +V +E PRF E E GRNR P
Sbjct: 917 DGTAVCFELTPRFWEKEPGRNRVP 940
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,353,821
Number of Sequences: 37544
Number of extensions: 492478
Number of successful extensions: 1480
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1477
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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