BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_G04 (878 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BC113367-1|AAI13368.1| 309|Homo sapiens radial spoke head 1 hom... 31 5.5 BC101519-1|AAI01520.1| 309|Homo sapiens radial spoke head 1 hom... 31 5.5 AK131230-1|BAD18413.1| 339|Homo sapiens protein ( Homo sapiens ... 31 5.5 AB041016-1|BAB92995.1| 309|Homo sapiens testis specific protein... 31 5.5 AB006536-1|BAB83694.1| 309|Homo sapiens h-meichroacidin protein. 31 5.5 AK097877-1|BAC05191.1| 179|Homo sapiens protein ( Homo sapiens ... 30 9.6 >BC113367-1|AAI13368.1| 309|Homo sapiens radial spoke head 1 homolog (Chlamydomonas) protein. Length = 309 Score = 31.1 bits (67), Expect = 5.5 Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Frame = -1 Query: 812 GRXERGVRAHSPAWRGTTXXPN*DTYSVSYEKGPRFPE-XEKGRN--RYPVKRQGRNRRA 642 GR E G R H RG PN DTY SYE G R + K +N RY + RN++ Sbjct: 23 GRNEAGER-HG---RGRARLPNGDTYEGSYEFGKRHGQGIYKFKNGARY-IGEYVRNKKH 77 Query: 641 XEGSF 627 +G+F Sbjct: 78 GQGTF 82 >BC101519-1|AAI01520.1| 309|Homo sapiens radial spoke head 1 homolog (Chlamydomonas) protein. Length = 309 Score = 31.1 bits (67), Expect = 5.5 Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Frame = -1 Query: 812 GRXERGVRAHSPAWRGTTXXPN*DTYSVSYEKGPRFPE-XEKGRN--RYPVKRQGRNRRA 642 GR E G R H RG PN DTY SYE G R + K +N RY + RN++ Sbjct: 23 GRNEAGER-HG---RGRARLPNGDTYEGSYEFGKRHGQGIYKFKNGARY-IGEYVRNKKH 77 Query: 641 XEGSF 627 +G+F Sbjct: 78 GQGTF 82 >AK131230-1|BAD18413.1| 339|Homo sapiens protein ( Homo sapiens cDNA FLJ16139 fis, clone BRALZ2017844, moderately similar to HOMEOBOX PROTEIN CHOX-E. ). Length = 339 Score = 31.1 bits (67), Expect = 5.5 Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 2/61 (3%) Frame = +3 Query: 633 PLXRSPVPT--LPLYRIPVPXFLPFGKAWPFLIAHAVXISVRXXGRSPPSWAVCTNPPFX 806 PL SPVP P P P+G W F + S R GR+P CT P Sbjct: 75 PLPASPVPLKLCPAAEQVSPAGAPYGTRWAFQVLSPSADSARLPGRAPGD-RDCTFQPSA 133 Query: 807 P 809 P Sbjct: 134 P 134 >AB041016-1|BAB92995.1| 309|Homo sapiens testis specific protein A2 protein. Length = 309 Score = 31.1 bits (67), Expect = 5.5 Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Frame = -1 Query: 812 GRXERGVRAHSPAWRGTTXXPN*DTYSVSYEKGPRFPE-XEKGRN--RYPVKRQGRNRRA 642 GR E G R H RG PN DTY SYE G R + K +N RY + RN++ Sbjct: 23 GRNEAGER-HG---RGRARLPNGDTYEGSYEFGKRHGQGIYKFKNGARY-IGEYVRNKKH 77 Query: 641 XEGSF 627 +G+F Sbjct: 78 GQGTF 82 >AB006536-1|BAB83694.1| 309|Homo sapiens h-meichroacidin protein. Length = 309 Score = 31.1 bits (67), Expect = 5.5 Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Frame = -1 Query: 812 GRXERGVRAHSPAWRGTTXXPN*DTYSVSYEKGPRFPE-XEKGRN--RYPVKRQGRNRRA 642 GR E G R H RG PN DTY SYE G R + K +N RY + RN++ Sbjct: 23 GRNEAGER-HG---RGRARLPNGDTYEGSYEFGKRHGQGIYKFKNGARY-IGEYVRNKKH 77 Query: 641 XEGSF 627 +G+F Sbjct: 78 GQGTF 82 >AK097877-1|BAC05191.1| 179|Homo sapiens protein ( Homo sapiens cDNA FLJ40558 fis, clone THYMU2002756. ). Length = 179 Score = 30.3 bits (65), Expect = 9.6 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = -3 Query: 507 GLFTVPGLLLAFCSHVLSCVYPLILWITVLP 415 GLF +P +L +FC L ++ LI W++ P Sbjct: 17 GLFLLPLVLFSFCLLKLVLIHGLIFWLSFFP 47 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 122,597,689 Number of Sequences: 237096 Number of extensions: 2655096 Number of successful extensions: 7400 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 7086 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7392 length of database: 76,859,062 effective HSP length: 90 effective length of database: 55,520,422 effective search space used: 11215125244 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -