Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_G04
         (878 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC113367-1|AAI13368.1|  309|Homo sapiens radial spoke head 1 hom...    31   5.5  
BC101519-1|AAI01520.1|  309|Homo sapiens radial spoke head 1 hom...    31   5.5  
AK131230-1|BAD18413.1|  339|Homo sapiens protein ( Homo sapiens ...    31   5.5  
AB041016-1|BAB92995.1|  309|Homo sapiens testis specific protein...    31   5.5  
AB006536-1|BAB83694.1|  309|Homo sapiens h-meichroacidin protein.      31   5.5  
AK097877-1|BAC05191.1|  179|Homo sapiens protein ( Homo sapiens ...    30   9.6  

>BC113367-1|AAI13368.1|  309|Homo sapiens radial spoke head 1
           homolog (Chlamydomonas) protein.
          Length = 309

 Score = 31.1 bits (67), Expect = 5.5
 Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = -1

Query: 812 GRXERGVRAHSPAWRGTTXXPN*DTYSVSYEKGPRFPE-XEKGRN--RYPVKRQGRNRRA 642
           GR E G R H    RG    PN DTY  SYE G R  +   K +N  RY +    RN++ 
Sbjct: 23  GRNEAGER-HG---RGRARLPNGDTYEGSYEFGKRHGQGIYKFKNGARY-IGEYVRNKKH 77

Query: 641 XEGSF 627
            +G+F
Sbjct: 78  GQGTF 82


>BC101519-1|AAI01520.1|  309|Homo sapiens radial spoke head 1
           homolog (Chlamydomonas) protein.
          Length = 309

 Score = 31.1 bits (67), Expect = 5.5
 Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = -1

Query: 812 GRXERGVRAHSPAWRGTTXXPN*DTYSVSYEKGPRFPE-XEKGRN--RYPVKRQGRNRRA 642
           GR E G R H    RG    PN DTY  SYE G R  +   K +N  RY +    RN++ 
Sbjct: 23  GRNEAGER-HG---RGRARLPNGDTYEGSYEFGKRHGQGIYKFKNGARY-IGEYVRNKKH 77

Query: 641 XEGSF 627
            +G+F
Sbjct: 78  GQGTF 82


>AK131230-1|BAD18413.1|  339|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16139 fis, clone BRALZ2017844, moderately
           similar to HOMEOBOX PROTEIN CHOX-E. ).
          Length = 339

 Score = 31.1 bits (67), Expect = 5.5
 Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
 Frame = +3

Query: 633 PLXRSPVPT--LPLYRIPVPXFLPFGKAWPFLIAHAVXISVRXXGRSPPSWAVCTNPPFX 806
           PL  SPVP    P      P   P+G  W F +      S R  GR+P     CT  P  
Sbjct: 75  PLPASPVPLKLCPAAEQVSPAGAPYGTRWAFQVLSPSADSARLPGRAPGD-RDCTFQPSA 133

Query: 807 P 809
           P
Sbjct: 134 P 134


>AB041016-1|BAB92995.1|  309|Homo sapiens testis specific protein A2
           protein.
          Length = 309

 Score = 31.1 bits (67), Expect = 5.5
 Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = -1

Query: 812 GRXERGVRAHSPAWRGTTXXPN*DTYSVSYEKGPRFPE-XEKGRN--RYPVKRQGRNRRA 642
           GR E G R H    RG    PN DTY  SYE G R  +   K +N  RY +    RN++ 
Sbjct: 23  GRNEAGER-HG---RGRARLPNGDTYEGSYEFGKRHGQGIYKFKNGARY-IGEYVRNKKH 77

Query: 641 XEGSF 627
            +G+F
Sbjct: 78  GQGTF 82


>AB006536-1|BAB83694.1|  309|Homo sapiens h-meichroacidin protein.
          Length = 309

 Score = 31.1 bits (67), Expect = 5.5
 Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = -1

Query: 812 GRXERGVRAHSPAWRGTTXXPN*DTYSVSYEKGPRFPE-XEKGRN--RYPVKRQGRNRRA 642
           GR E G R H    RG    PN DTY  SYE G R  +   K +N  RY +    RN++ 
Sbjct: 23  GRNEAGER-HG---RGRARLPNGDTYEGSYEFGKRHGQGIYKFKNGARY-IGEYVRNKKH 77

Query: 641 XEGSF 627
            +G+F
Sbjct: 78  GQGTF 82


>AK097877-1|BAC05191.1|  179|Homo sapiens protein ( Homo sapiens
           cDNA FLJ40558 fis, clone THYMU2002756. ).
          Length = 179

 Score = 30.3 bits (65), Expect = 9.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 507 GLFTVPGLLLAFCSHVLSCVYPLILWITVLP 415
           GLF +P +L +FC   L  ++ LI W++  P
Sbjct: 17  GLFLLPLVLFSFCLLKLVLIHGLIFWLSFFP 47


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,597,689
Number of Sequences: 237096
Number of extensions: 2655096
Number of successful extensions: 7400
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7392
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11215125244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)