Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_G04
         (878 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68753-3|CAA92988.3|  984|Caenorhabditis elegans Hypothetical pr...    31   1.4  
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z80215-14|CAI79138.1|  662|Caenorhabditis elegans Hypothetical p...    28   7.7  
Z80215-13|CAI79137.1|  640|Caenorhabditis elegans Hypothetical p...    28   7.7  
Z80215-12|CAB02277.1|  652|Caenorhabditis elegans Hypothetical p...    28   7.7  

>Z68753-3|CAA92988.3|  984|Caenorhabditis elegans Hypothetical
           protein ZC518.2 protein.
          Length = 984

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/66 (25%), Positives = 27/66 (40%)
 Frame = +3

Query: 522 FPXAPPPLTSITKSTLKSEVAKPDRTIKIPXRFPLEAPLXRSPVPTLPLYRIPVPXFLPF 701
           F   PP  +  T+ ++    A P   +  P  FP   P   S  P++   + P+P  L  
Sbjct: 102 FSHQPPSFSPATQPSMNGHHAPPPPAVSRPPAFPTPPPSVGSAAPSI---QPPIPSALAS 158

Query: 702 GKAWPF 719
            +  PF
Sbjct: 159 ARPAPF 164


>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical
           protein C46C2.1b protein.
          Length = 1677

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = +3

Query: 534 PPPLTSITKSTLKSEVAKPDRTIKIPXRFPLEAPLXRSPVPTLPLYRIPVP 686
           PPPL++ T + ++    +P   + +    P  +P    P P L      VP
Sbjct: 770 PPPLSTQTSAEIQQSAQQPSVPVTMIANIPAMSPTSAQPQPVLSPTSAAVP 820


>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical
           protein C46C2.1a protein.
          Length = 1838

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = +3

Query: 534 PPPLTSITKSTLKSEVAKPDRTIKIPXRFPLEAPLXRSPVPTLPLYRIPVP 686
           PPPL++ T + ++    +P   + +    P  +P    P P L      VP
Sbjct: 770 PPPLSTQTSAEIQQSAQQPSVPVTMIANIPAMSPTSAQPQPVLSPTSAAVP 820


>Z80215-14|CAI79138.1|  662|Caenorhabditis elegans Hypothetical
           protein C36B1.12c protein.
          Length = 662

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 522 KRQQRGLFTVPGLLLAFCSHVLSCV-YPLILWITVL 418
           +RQ      +  + +A C HVL C+  P + WI++L
Sbjct: 390 RRQPYAFILLDVINMALCMHVLKCLRLPSLKWISIL 425


>Z80215-13|CAI79137.1|  640|Caenorhabditis elegans Hypothetical
           protein C36B1.12b protein.
          Length = 640

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 522 KRQQRGLFTVPGLLLAFCSHVLSCV-YPLILWITVL 418
           +RQ      +  + +A C HVL C+  P + WI++L
Sbjct: 390 RRQPYAFILLDVINMALCMHVLKCLRLPSLKWISIL 425


>Z80215-12|CAB02277.1|  652|Caenorhabditis elegans Hypothetical
           protein C36B1.12a protein.
          Length = 652

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 522 KRQQRGLFTVPGLLLAFCSHVLSCV-YPLILWITVL 418
           +RQ      +  + +A C HVL C+  P + WI++L
Sbjct: 390 RRQPYAFILLDVINMALCMHVLKCLRLPSLKWISIL 425


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,366,589
Number of Sequences: 27780
Number of extensions: 367000
Number of successful extensions: 940
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)