BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_G04 (878 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 24 1.6 AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 23 3.7 DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 22 8.6 AY155490-1|AAO12861.1| 342|Apis mellifera Ammar1 transposase pr... 22 8.6 >DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine receptor beta1subunit protein. Length = 520 Score = 24.2 bits (50), Expect = 1.6 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = -3 Query: 468 SHVLSCVYPLILWITVLPPLSELIPLAA 385 S +LS V L+L +LPP S ++PL A Sbjct: 270 SILLSLVVFLLLVSKILPPTSLVLPLIA 297 >AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein protein. Length = 1124 Score = 23.0 bits (47), Expect = 3.7 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Frame = +3 Query: 567 LKSEVAKPDRTIKIPXRFPLEAPLXRSPV-PTLPLYRIPVP 686 L + P +P +A + R P+ P +P+Y +PVP Sbjct: 760 LSVSIPPPPSAQNVPQNTNSQA-IPRIPILPMIPVYCVPVP 799 >DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine receptor beta2subunit protein. Length = 427 Score = 21.8 bits (44), Expect = 8.6 Identities = 8/19 (42%), Positives = 15/19 (78%) Frame = +3 Query: 531 APPPLTSITKSTLKSEVAK 587 AP ++S+T+S LKS++ + Sbjct: 337 APTWISSVTESVLKSKIGQ 355 >AY155490-1|AAO12861.1| 342|Apis mellifera Ammar1 transposase protein. Length = 342 Score = 21.8 bits (44), Expect = 8.6 Identities = 7/15 (46%), Positives = 9/15 (60%) Frame = +3 Query: 777 WAVCTNPPFXPTAAP 821 W V +PP+ P AP Sbjct: 264 WDVLPHPPYSPDLAP 278 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 230,267 Number of Sequences: 438 Number of extensions: 5354 Number of successful extensions: 5 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5 length of database: 146,343 effective HSP length: 57 effective length of database: 121,377 effective search space used: 28523595 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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