Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_G04
(878 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 31 1.3
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 30 1.8
At4g00890.1 68417.m00120 proline-rich family protein contains pr... 29 3.1
At3g28550.1 68416.m03565 proline-rich extensin-like family prote... 29 3.1
At1g24220.1 68414.m03054 paired amphipathic helix repeat-contain... 29 3.1
At5g45050.2 68418.m05524 disease resistance protein-related simi... 29 5.4
At5g45050.1 68418.m05523 disease resistance protein-related simi... 29 5.4
At3g20830.1 68416.m02634 protein kinase family protein contains ... 28 7.2
At1g26150.1 68414.m03192 protein kinase family protein similar t... 28 9.5
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = +3
Query: 519 VFPXAPPPLTSITKSTLKSEVAKPDRTIKIPXRFPLEAPLXRSPVPTLPLYRIPVP 686
V P P P S+ T P T +P P +P +P P++P PVP
Sbjct: 115 VSPPPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVP 170
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +3
Query: 513 AGVFPXAPPPLT-SITKSTLKSEVAKPDRTIKIPXRFPLEAPLXRSPVPTLPLYRIPV 683
A V P +PPP T S+ T P T +P P +P +P P++P PV
Sbjct: 76 APVPPVSPPPPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPV 133
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/55 (29%), Positives = 22/55 (40%)
Frame = +3
Query: 519 VFPXAPPPLTSITKSTLKSEVAKPDRTIKIPXRFPLEAPLXRSPVPTLPLYRIPV 683
V P P P S+ T P T +P P +P +P P++P PV
Sbjct: 97 VSPPPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPV 151
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 30.3 bits (65), Expect = 1.8
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 2/103 (1%)
Frame = +3
Query: 525 PXAPPPL--TSITKSTLKSEVAKPDRTIKIPXRFPLEAPLXRSPVPTLPLYRIPVPXFLP 698
P PPP+ +T+S S V P T P P+ +SP P P+Y PV P
Sbjct: 675 PPPPPPVYYPPVTQSPPPSPVYYPPVTQSPPPPPVYYLPVTQSPPPPSPVYYPPVAKSPP 734
Query: 699 FGKAWPFLIAHAVXISVRXXGRSPPSWAVCTNPPFXPTAAPYP 827
P + ++ PPS V +PP P +P P
Sbjct: 735 -----PPSPVYYPPVT---QSPPPPSTPVEYHPPASPNQSPPP 769
>At4g00890.1 68417.m00120 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 431
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +3
Query: 525 PXAPP-PLTSITKSTLKSEVAKPDRTIKIPXRFPLEAPLXR---SPVPTLP 665
P PP P I+ S+LKS + P TI P P +PL + SP P+LP
Sbjct: 283 PMPPPSPTAQISLSSLKSPIPSP-ATITAPPP-PFSSPLSQTTPSPKPSLP 331
>At3g28550.1 68416.m03565 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1018
Score = 29.5 bits (63), Expect = 3.1
Identities = 29/108 (26%), Positives = 41/108 (37%), Gaps = 5/108 (4%)
Frame = +3
Query: 519 VFPXAPPPLTSITKSTLKSEVAKPDRTIKIPXRFPLEAP--LXRSPVPTLPLYRIPVPXF 692
V+ PPP S + + P P + +P + +SP P P P +
Sbjct: 543 VYSSPPPPYYSPSPKVVYKSPPPPYVYSSPPPPYYSPSPKVVYKSPPPPYVYSSPPPPYY 602
Query: 693 LPFGKAW---PFLIAHAVXISVRXXGRSPPSWAVCTNPPFXPTAAPYP 827
P K + P HA S + +SPP VC PP P +P P
Sbjct: 603 SPSPKVYYKSPPSPYHAP--SPKVLYKSPPHPHVCVCPPPPPCYSPSP 648
>At1g24220.1 68414.m03054 paired amphipathic helix repeat-containing
protein weak similarity to transcription co-repressor
Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 744
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = -3
Query: 444 PLILWITVLPPLSELIPLAAAERPXXXXXXXXXXXXXQYANRLSPRVGRFI--NAEKTSH 271
P+ L IT++PP + + A++P + N+L P+ R I AEK +H
Sbjct: 264 PVKLKITIIPPKARRTIPSEADKPTHTDELN-------FMNKLPPKRRRTIPSEAEKPTH 316
Query: 270 TSPLNLKHKM 241
T LN +K+
Sbjct: 317 TDELNFMNKL 326
>At5g45050.2 68418.m05524 disease resistance protein-related similar
to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
profiles PF03106: WRKY DNA -binding domain, PF00931:
NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1344
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 343 PLPRSLTRCARSFGCGERYQLTQRR 417
P PRS RCA S GC R Q+ + R
Sbjct: 1169 PYPRSYYRCASSKGCFARKQVERSR 1193
>At5g45050.1 68418.m05523 disease resistance protein-related similar
to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
profiles PF03106: WRKY DNA -binding domain, PF00931:
NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1372
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 343 PLPRSLTRCARSFGCGERYQLTQRR 417
P PRS RCA S GC R Q+ + R
Sbjct: 1197 PYPRSYYRCASSKGCFARKQVERSR 1221
>At3g20830.1 68416.m02634 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 408
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -2
Query: 334 PIRKPPLPARWPIH*CRKNLPHL 266
P PP P R P H CRKN P +
Sbjct: 384 PSSAPPSPLRSPPHVCRKNDPFI 406
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/70 (27%), Positives = 27/70 (38%)
Frame = +3
Query: 477 PAKGQEP*KGRVAGVFPXAPPPLTSITKSTLKSEVAKPDRTIKIPXRFPLEAPLXRSPVP 656
PA+ P + ++ P PP S+T + P P P EAP +PV
Sbjct: 57 PAQSSPPPETPLSSPPPEPSPPSPSLTGPPPTTIPVSPPPEPSPPPPLPTEAPPPANPVS 116
Query: 657 TLPLYRIPVP 686
+ P P P
Sbjct: 117 SPPPESSPPP 126
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,594,605
Number of Sequences: 28952
Number of extensions: 353163
Number of successful extensions: 953
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2067932800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -