Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_G03
         (953 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    34   0.026
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.55 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.97 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   1.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   9.0  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 34.3 bits (75), Expect = 0.026
 Identities = 26/89 (29%), Positives = 28/89 (31%), Gaps = 2/89 (2%)
 Frame = +1

Query: 508 PPKGGGVXGXXPPXKXXX--PPXXGPAVXXSPXPXHPXGXXXVPPXPRGXGPXPXXVXGG 681
           PP G       PP       PP   P++  S  P  P G    PP P      P    G 
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGM 463

Query: 682 VXXIXHPPXNPXXPPGKXFXXXXPAPXXP 768
                 PP  P  PP        PAP  P
Sbjct: 464 PAAPPLPPAAPAPPPA-----PAPAPAAP 487



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 27/114 (23%), Positives = 31/114 (27%), Gaps = 8/114 (7%)
 Frame = +3

Query: 630 PPXPPGX---GAXPXTXXRGGXXHPPPPXKPXXPXGXTFXXXXXG-----PXXPXNNX*X 785
           PP PP     G  P          PPPP  P      +      G     P  P +    
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPST 372

Query: 786 XRXXXPXXXXXXPPXPPQXKXXXXPPPXXGGXXPPXXXPXXXPXXSXSPXXPXP 947
            R   P         PP       PPP   G   P   P      + +P  P P
Sbjct: 373 GRQPPPLSSSRAVSNPPA------PPPAIPGRSAPALPPLGNASRTSTPPVPTP 420


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.55
 Identities = 20/54 (37%), Positives = 20/54 (37%)
 Frame = +1

Query: 562 PPXXGPAVXXSPXPXHPXGXXXVPPXPRGXGPXPXXVXGGVXXIXHPPXNPXXP 723
           PP   PAV   P P  P      PP P   GP P     GV     PP  P  P
Sbjct: 732 PPPPPPAVIV-PTPA-PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.1 bits (62), Expect = 0.97
 Identities = 25/101 (24%), Positives = 29/101 (28%), Gaps = 2/101 (1%)
 Frame = +1

Query: 541  PPXKXXXPPXXGPAVXXSPXPXHPXGXXXVPPXPRGXGPXPXXVXGGVXXIXHPPXNPXX 720
            P      PP   P+    P P    G   VPP P    P P     GV  +  P   P  
Sbjct: 1162 PKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPP-PSEAPPVPKPSV-GVPPVPPPSTAPPV 1219

Query: 721  PPGKXFXXXXPAP--XXP*ITIXXPAXGXLXXPXXXPPXPH 837
            P         P P    P +         +  P    P PH
Sbjct: 1220 PTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPH 1260



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 27/122 (22%), Positives = 32/122 (26%), Gaps = 4/122 (3%)
 Frame = +3

Query: 594  PXSSSPPXX--GXXPPXPPGXGAXPXTXXRGGXXHPPPPXKPXXPXGXTFXXXXXGPXXP 767
            P + +PP       PP P      P      G    PPP         +       P  P
Sbjct: 1027 PSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVP 1086

Query: 768  XNNX*XXRXXXPXXXXXXPPXP-PQXKXXXXPPPXXGGXXP-PXXXPXXXPXXSXSPXXP 941
              +        P      PP P P       P P      P P       P  S +P  P
Sbjct: 1087 APS---GIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVP 1143

Query: 942  XP 947
             P
Sbjct: 1144 KP 1145



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 13/40 (32%), Positives = 14/40 (35%)
 Frame = +1

Query: 544  PXKXXXPPXXGPAVXXSPXPXHPXGXXXVPPXPRGXGPXP 663
            P     PP   P+V   P P    G   VP    G  P P
Sbjct: 1153 PAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVP 1192


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 15/52 (28%), Positives = 16/52 (30%)
 Frame = +1

Query: 508 PPKGGGVXGXXPPXKXXXPPXXGPAVXXSPXPXHPXGXXXVPPXPRGXGPXP 663
           P     +    PP     PP   PA      P  P     VPP P    P P
Sbjct: 154 PASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 15/43 (34%), Positives = 16/43 (37%)
 Frame = +3

Query: 822  PPXPPQXKXXXXPPPXXGGXXPPXXXPXXXPXXSXSPXXPXPG 950
            PP P         PP   G  PP   P   P  S +P  P PG
Sbjct: 1708 PPPPMSVPPPPSAPPMPAG--PPSAPPPPLPASS-APSVPNPG 1747


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,582,121
Number of Sequences: 5004
Number of extensions: 17866
Number of successful extensions: 70
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)