Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_G01
         (1469 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.25 
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.58 
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)                  31   3.1  
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   5.4  
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.1  

>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1212

 Score = 34.3 bits (75), Expect = 0.25
 Identities = 17/58 (29%), Positives = 20/58 (34%)
 Frame = +2

Query: 860  NPPXSXNLLXPXNPPPQXKDLXXPPXHPXXXXSDSXXXXARLPPAXRXXQXXPPPRXP 1033
            +PP +  L  P  P P    +  PP               R PP     Q  PPPR P
Sbjct: 1034 SPPSAQPLPPPRKPSPPPSAVPIPPPRKPSPPPSEPAPPPRQPPPPSTSQPVPPPRQP 1091


>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 33.1 bits (72), Expect = 0.58
 Identities = 18/62 (29%), Positives = 19/62 (30%)
 Frame = +2

Query: 863  PPXSXNLLXPXNPPPQXKDLXXPPXHPXXXXSDSXXXXARLPPAXRXXQXXPPPRXPPRX 1042
            PP       P  PPP   +   PP  P             LPP        PPP  PP  
Sbjct: 933  PPPPPGGSAPSQPPPPGGNAPPPPPPPGGSAPPPGGGAPPLPPPPGGSAPPPPPPPPPPP 992

Query: 1043 HP 1048
             P
Sbjct: 993  PP 994


>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
          Length = 457

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 17/57 (29%), Positives = 18/57 (31%)
 Frame = +2

Query: 878  NLLXPXNPPPQXKDLXXPPXHPXXXXSDSXXXXARLPPAXRXXQXXPPPRXPPRXHP 1048
            N+  P  PPP       PP  P    S         PP        PPP  PP   P
Sbjct: 362  NMSPPPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPP 418


>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 29.9 bits (64), Expect = 5.4
 Identities = 20/64 (31%), Positives = 20/64 (31%), Gaps = 1/64 (1%)
 Frame = +2

Query: 860  NPPXSXNLL-XPXNPPPQXKDLXXPPXHPXXXXSDSXXXXARLPPAXRXXQXXPPPRXPP 1036
            NPP    L   P NPPP       PP  P              PP        PPP  PP
Sbjct: 153  NPPYPPPLYPPPPNPPPPNAPYPPPPYPPPPNPPYPPPPNPPYPPPPNAPN--PPPPNPP 210

Query: 1037 RXHP 1048
               P
Sbjct: 211  YPPP 214


>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1572

 Score = 29.5 bits (63), Expect = 7.1
 Identities = 20/65 (30%), Positives = 23/65 (35%)
 Frame = +2

Query: 854  RYNPPXSXNLLXPXNPPPQXKDLXXPPXHPXXXXSDSXXXXARLPPAXRXXQXXPPPRXP 1033
            R  PP + +   P  PP        PP  P      S     RLPP     Q  PPP  P
Sbjct: 580  RVPPPGTPHPRVP--PPGAPHPKVPPPGAPYQRLPYSGAYHPRLPPPGPPYQRVPPPGAP 637

Query: 1034 PRXHP 1048
             +  P
Sbjct: 638  IQRVP 642



 Score = 29.1 bits (62), Expect = 9.4
 Identities = 20/66 (30%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
 Frame = +2

Query: 854  RYNPPXSXNLLXPXNPPPQXKDLXXPPXHPXXXXSDSXXXXARLPPAXRXXQXXPPPRXP 1033
            R  PP + +   P  PP        PP  P            R+PP     Q  PPP  P
Sbjct: 450  RVPPPGAPHPRVP--PPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHQRVPPPGAP 507

Query: 1034 -PRXHP 1048
             PR  P
Sbjct: 508  HPRVPP 513


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,196,527
Number of Sequences: 59808
Number of extensions: 104385
Number of successful extensions: 261
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4742061908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)