Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_G01
         (1469 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61080.1 68414.m06877 proline-rich family protein                   32   1.1  
At2g23770.1 68415.m02839 protein kinase family protein / peptido...    31   1.4  
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex...    31   1.9  
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    30   3.3  
At5g48920.1 68418.m06052 hydroxyproline-rich glycoprotein family...    30   4.4  
At1g26150.1 68414.m03192 protein kinase family protein similar t...    30   4.4  

>At1g61080.1 68414.m06877 proline-rich family protein 
          Length = 907

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 17/58 (29%), Positives = 21/58 (36%)
 Frame = +2

Query: 863  PPXSXNLLXPXNPPPQXKDLXXPPXHPXXXXSDSXXXXARLPPAXRXXQXXPPPRXPP 1036
            PP    +  P  PPP  +    PP  P    + +       PP     Q  PPP  PP
Sbjct: 514  PPLPTTIAAPPPPPPPPRAAVAPPPPPPPPGTAAAPPP---PPPPPGTQAAPPPPPPP 568



 Score = 29.1 bits (62), Expect = 7.7
 Identities = 18/58 (31%), Positives = 19/58 (32%)
 Frame = +2

Query: 863  PPXSXNLLXPXNPPPQXKDLXXPPXHPXXXXSDSXXXXARLPPAXRXXQXXPPPRXPP 1036
            PP +     P  PPP       PP  P    S S       PP        PPP  PP
Sbjct: 555  PPGTQAAPPPPPPPPMQNRAPSPPPMPMGN-SGSGGPPPPPPPMPLANGATPPPPPPP 611


>At2g23770.1 68415.m02839 protein kinase family protein /
           peptidoglycan-binding LysM domain-containing protein
           contains Pfam domains, PF00069: Protein kinase domain
           and PF01476: LysM domain
          Length = 612

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 860 NPPXSXNLLXPXNPPPQXKDLXXPPXHP 943
           NPP + N L P  PPP  + +  PP  P
Sbjct: 235 NPPANTNSLIPPPPPPPPQSVSPPPLSP 262


>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
            extensin family protein similar to extensin-like protein
            [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
            contains leucine-rich repeats, Pfam:PF00560; contains
            proline rich extensin domains, INTERPRO:IPR002965
          Length = 727

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 17/63 (26%), Positives = 19/63 (30%)
 Frame = +2

Query: 857  YNPPXSXNLLXPXNPPPQXKDLXXPPXHPXXXXSDSXXXXARLPPAXRXXQXXPPPRXPP 1036
            Y+PP    +  P  PPP       PP H       S       PP        P    PP
Sbjct: 516  YSPPPPPPVYSPPPPPPVYSPPPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPP 575

Query: 1037 RXH 1045
              H
Sbjct: 576  PVH 578


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
            extensin family protein similar to extensin-like protein
            [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
            contains leucine-rich repeats, Pfam:PF00560; contains
            proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 16/60 (26%), Positives = 20/60 (33%)
 Frame = +2

Query: 857  YNPPXSXNLLXPXNPPPQXKDLXXPPXHPXXXXSDSXXXXARLPPAXRXXQXXPPPRXPP 1036
            ++ P +     P +PPP       PP  P    S         PP        PPP  PP
Sbjct: 417  FSTPPTLTSPPPPSPPPPVYSPPPPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPPPPPPP 476



 Score = 29.5 bits (63), Expect = 5.8
 Identities = 18/62 (29%), Positives = 19/62 (30%)
 Frame = +2

Query: 863  PPXSXNLLXPXNPPPQXKDLXXPPXHPXXXXSDSXXXXARLPPAXRXXQXXPPPRXPPRX 1042
            PP   +   P  PPP       PP  P      S       PP        PPP  PP  
Sbjct: 432  PPPVYSPPPPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPPP 491

Query: 1043 HP 1048
             P
Sbjct: 492  PP 493



 Score = 29.1 bits (62), Expect = 7.7
 Identities = 18/60 (30%), Positives = 20/60 (33%)
 Frame = +2

Query: 857  YNPPXSXNLLXPXNPPPQXKDLXXPPXHPXXXXSDSXXXXARLPPAXRXXQXXPPPRXPP 1036
            Y+PP       P  PPP       PP  P      S    +  PP        PPP  PP
Sbjct: 449  YSPPPPP---PPPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPPPPPVYSPPPPPPPPP 505


>At5g48920.1 68418.m06052 hydroxyproline-rich glycoprotein family
            protein contains proline-rich extensin domains,
            INTERPRO:IPR002965
          Length = 205

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 19/65 (29%), Positives = 21/65 (32%), Gaps = 2/65 (3%)
 Frame = +2

Query: 857  YNPPXSXNLLX-PXNPPPQXKDLXXPPXHPXXXXSDSXXXXARLPPAXRXXQXXPPPRXP 1033
            Y+PP   + L  P  PPP       PP  P              PP        PPP  P
Sbjct: 11   YSPPSHQHPLPSPVPPPPSHISPPPPPFSPPHHPPPPHFSPPHQPPPSPYPHPHPPPPSP 70

Query: 1034 -PRXH 1045
             P  H
Sbjct: 71   YPHPH 75


>At1g26150.1 68414.m03192 protein kinase family protein similar to Pto
            kinase interactor 1 GI:3668069 from [Lycopersicon
            esculentum]
          Length = 760

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 17/63 (26%), Positives = 21/63 (33%)
 Frame = +2

Query: 860  NPPXSXNLLXPXNPPPQXKDLXXPPXHPXXXXSDSXXXXARLPPAXRXXQXXPPPRXPPR 1039
            NPP + N     +PPP+   L  PP  P               P     +  PPP  P  
Sbjct: 49   NPPETTNTPAQSSPPPE-TPLSSPPPEPSPPSPSLTGPPPTTIPVSPPPEPSPPPPLPTE 107

Query: 1040 XHP 1048
              P
Sbjct: 108  APP 110


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,776,030
Number of Sequences: 28952
Number of extensions: 88761
Number of successful extensions: 352
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3903629760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)