Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_F23
         (1029 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.037
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   1.1  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   1.1  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    29   1.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   9.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   9.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.9 bits (74), Expect = 0.037
 Identities = 17/52 (32%), Positives = 17/52 (32%)
 Frame = +2

Query: 656 PPPPPQKXXXXRXXNPXXXXPXXPGAXXQKXXPXPPXXXXXKXPXAPPPPXA 811
           PPPPP          P    P  P        P PP       P  PPPP A
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784



 Score = 27.1 bits (57), Expect = 4.3
 Identities = 14/47 (29%), Positives = 14/47 (29%)
 Frame = +1

Query: 664 PPPKXPXXXXXEPXXXGPXXPGXXXPKXAXXPPXTPXXKXPXGPPPP 804
           PPP  P      P       P          PP  P      GPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 26.2 bits (55), Expect = 7.5
 Identities = 15/49 (30%), Positives = 15/49 (30%)
 Frame = +2

Query: 659 PPPPQKXXXXRXXNPXXXXPXXPGAXXQKXXPXPPXXXXXKXPXAPPPP 805
           PPPP          P    P  P A      P PP          PPPP
Sbjct: 732 PPPPPPAVIVPTPAP-APIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 19/72 (26%), Positives = 20/72 (27%), Gaps = 2/72 (2%)
 Frame = +1

Query: 595 PXGGPPXGEAPXIXXXNRXXPXPPPPKXPXXXXXEPXXXGP--XXPGXXXPKXAXXPPXT 768
           P   PP   AP     +   P PPPP  P           P               P  T
Sbjct: 169 PSFQPPSAAAPATSLPSDYNPPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYT 228

Query: 769 PXXKXPXGPPPP 804
           P    P   PPP
Sbjct: 229 PKQADPLPAPPP 240


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 19/52 (36%), Positives = 19/52 (36%)
 Frame = -2

Query: 809 PXGGGGPSGFXXXGVQGGXXAXFGXKXPGXXGPXXXGSXXXXXGXFGGGGXG 654
           P G GG  GF   G   G    FG    G  G    G      G FGGG  G
Sbjct: 204 PGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEG--GPGGFGGGPGGFGGGLGG 253


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 22/55 (40%), Positives = 23/55 (41%)
 Frame = -2

Query: 809 PXGGGGPSGFXXXGVQGGXXAXFGXKXPGXXGPXXXGSXXXXXGXFGGGGXGXXR 645
           P G GG  GF   G +GG    FG    G  G    GS     G FGGG  G  R
Sbjct: 134 PAGRGGRGGFR--GGRGGSRGGFGGNSRGGFG---GGSR----GGFGGGSRGGSR 179


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 12/36 (33%), Positives = 14/36 (38%)
 Frame = +1

Query: 739 PKXAXXPPXTPXXKXPXGPPPPXGXXXKXKKKXXXP 846
           P     PP  P  + P  PPPP       K+K   P
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 18/71 (25%), Positives = 21/71 (29%), Gaps = 3/71 (4%)
 Frame = +1

Query: 595 PXGGPPXGEAPX---IXXXNRXXPXPPPPKXPXXXXXEPXXXGPXXPGXXXPKXAXXPPX 765
           P   PP   A     +    R  P PPPP+       +P    P             PP 
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPP---PLSSSRAVSNPPAPPPA 394

Query: 766 TPXXKXPXGPP 798
            P    P  PP
Sbjct: 395 IPGRSAPALPP 405


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 18/72 (25%), Positives = 20/72 (27%)
 Frame = +1

Query: 595  PXGGPPXGEAPXIXXXNRXXPXPPPPKXPXXXXXEPXXXGPXXPGXXXPKXAXXPPXTPX 774
            P G PP  + P +       P   PP         P       P    P  A  P   P 
Sbjct: 1117 PSGAPPVPK-PSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPS 1175

Query: 775  XKXPXGPPPPXG 810
               P  P P  G
Sbjct: 1176 SGIPPVPKPAAG 1187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,764,630
Number of Sequences: 5004
Number of extensions: 18522
Number of successful extensions: 87
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 537243034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)