Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_F22
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    29   0.65 
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc...    27   2.6  
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    26   6.1  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   8.1  
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   8.1  

>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 362 LHADACTLTSCPTEAGKT-QTLDFSLHIGKKLXTGNFEFNGSL 487
           LHA +  L S   E     +T+ F LHI KK   GN+EFN SL
Sbjct: 574 LHALSLPLPSSNDEQTPVKETIPF-LHIRKKSVDGNWEFNKSL 615


>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 475

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +3

Query: 192 TVNXVRIDPCVNSRLCHLKKGKNAKVSFDFTPQFSTTKLKTGLFGLKNGAEIPF 353
           T   +   PC+++ L  +     A+   +FT   +TT+   G  GL+ GA I F
Sbjct: 421 TYKSILSKPCISTGLGLVYATPAARFELNFTLPIATTEKDIGRKGLQFGAGIDF 474


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 344 FSAILQPKEAGLELSCRELWCKVERNLRVFPFLEVAQSTVNTGVN 210
           F  +LQ K AG  +S  +LW +      V P    A +T ++  N
Sbjct: 220 FEQVLQKKNAGFNVSITDLWGRALALKLVNPLTGGANTTFSSVTN 264


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = -2

Query: 365  VKSIKRNFSAILQPKEAGLELSCR--ELWCKVERNLRVFPFLEVAQSTVNTGVNSDXVHS 192
            + ++K  F +I   K   L+ + R   LW K   N  V   L V  STVN  +  D +  
Sbjct: 1685 IPAVKGFFKSIALSK-GNLQDTLRLLNLWFKFGNNSNVINTLNVGISTVNIDIWLDVIPQ 1743

Query: 191  TRAGVH 174
              A +H
Sbjct: 1744 LIARIH 1749


>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = -3

Query: 559 VSSFTKPALTFVL*QHIWLSWSSFQASIEFKVSXXQFFSNMQ 434
           ++SF+   + +++   +W+SW+    S    ++  Q F  MQ
Sbjct: 287 MTSFSSEQMLYIMYNIVWISWNCGIFSFPRGITQSQLFELMQ 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,777,902
Number of Sequences: 5004
Number of extensions: 49614
Number of successful extensions: 106
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)