Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_F22
         (873 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14698| Best HMM Match : E1_DerP2_DerF2 (HMM E-Value=4.1e-31)        29   3.8  
SB_43766| Best HMM Match : RVT_1 (HMM E-Value=0.43)                    29   6.6  

>SB_14698| Best HMM Match : E1_DerP2_DerF2 (HMM E-Value=4.1e-31)
          Length = 167

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +3

Query: 210 IDPCVNSRLCHLKKGKNAKVSFDFTPQFSTTKLKTGLFGLKNGAEIPF 353
           ++PC     C   KG N      F P    +     +FG+  G ++PF
Sbjct: 40  LEPC-EEEPCTFHKGSNETCKATFVPNELVSSATIEVFGIIGGVQVPF 86


>SB_43766| Best HMM Match : RVT_1 (HMM E-Value=0.43)
          Length = 491

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +3

Query: 141 FNVVTTRLCREVDASACT--VNXVRIDPCVNSRLCHLKKGKNA 263
           F    T+LC  +  S CT   +   I+P V SRL  L KG+ A
Sbjct: 32  FKQSATKLCDAMTKSLCTKYFDPETIEPLVASRLIPLDKGEGA 74


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,477,605
Number of Sequences: 59808
Number of extensions: 394059
Number of successful extensions: 687
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2503194881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)