Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_F21
         (985 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.02 |||DUF1000 family protein|Schizosaccharomyces pombe|...    89   9e-19
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    60   6e-10
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma...    29   1.0  
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    28   1.8  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    26   7.1  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    26   9.4  

>SPBP35G2.02 |||DUF1000 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 89.0 bits (211), Expect = 9e-19
 Identities = 52/142 (36%), Positives = 80/142 (56%), Gaps = 4/142 (2%)
 Frame = +1

Query: 394 LNEIPLEGSGKSVFKPWDKKNWIEAKFVESDTDEELLFNIPFTGNIKLKGIKVASEDTDS 573
           LNE  +  SGK VFKPWD + + +   VESD D++LLF +PF G   LK I V     ++
Sbjct: 36  LNEA-VPDSGKLVFKPWDLR-YDDTDIVESDADDQLLFQVPFAGAATLKSILVRIFPNET 93

Query: 574 HPSKLRLFKNRPNMTFDDV-MIEPDQVFELQKDTDG--ILEYCPKIVTFSSVSHLTMHFP 744
            P    LF NR ++ FD +  ++  + FE     +G  I E+  K   + ++ +L + F 
Sbjct: 94  APHSFSLFPNRTDLDFDTIGDVQATETFEFPLTFEGSHIFEFPVKTRLYQNLQNLNIFFT 153

Query: 745 KNFGA-ETTKIYYIGLKGEWTP 807
           K+ G+ + T+I YIGL+G + P
Sbjct: 154 KSDGSDDPTQIAYIGLRGSFVP 175


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 59.7 bits (138), Expect = 6e-10
 Identities = 51/150 (34%), Positives = 75/150 (50%), Gaps = 7/150 (4%)
 Frame = +1

Query: 370 IDLDHLECLNEIPLEGSGKSVFKPWDKKNWIEAKFVESDTDEELLFNIPFTGNIKLKGIK 549
           I+   LECLN+   +   KS F      N   + F+ESD DE+L+  IPF   +K+  I 
Sbjct: 133 IENPQLECLNQQD-DHDLKSAF------NSNPSSFLESDVDEQLMIYIPFLEVVKVHSIA 185

Query: 550 V--ASEDTDSHPSKLRLFKNRP-NMTFDDV-MIEPDQVFE-LQKDTDGILEYCP-KIVTF 711
           +     +T S P  ++L+ N+P N++F+D     P QV E +  + D      P + V F
Sbjct: 186 ITPVKGETSSAPKTIKLYINQPNNLSFEDAESFTPTQVIEDIVYEQDDQPTIIPLRFVKF 245

Query: 712 SSVSHLTMHFPKNFG-AETTKIYYIGLKGE 798
             V+ L +    N G  ETTKI  + L GE
Sbjct: 246 QRVNSLVIFIYSNVGEEETTKISRLELFGE 275


>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
 Frame = +1

Query: 550 VASEDTDSHPSKLRLFKNRP--NMTFDDVMIEPDQVFELQKDTDGILEYCPKIVTFSSVS 723
           +AS DTDSH S   L K RP  N+ ++D  ++ D     + + D   +Y   I TF+ + 
Sbjct: 21  LASIDTDSHLSPKVLEKLRPTENLAYEDDSLDDDTWRSKRWEFD--YQY-SGISTFAHLP 77

Query: 724 HLTMHFPKNFGAETTKIYYIGLKGEWTPSHRHG 822
           H+     +   +E   I  IG+  +   SHR G
Sbjct: 78  HVRCLVEQ---SEDFDIAIIGVPFDTAVSHRPG 107


>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -2

Query: 525 SSEWYIKQQFFISITFNKFCFYPILFVPRFKNTFTRTLQGD 403
           S  W+     F+SI F    F   +F  RF+N   RTL  D
Sbjct: 82  SRSWFRAFLSFLSICFLFISFLNFIFSTRFQNKLYRTLPQD 122


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 805 VSILLLIQCNKFLLFLPQSSLE-SALLDVILKK 710
           V  LLL  C +FLL  P++ L+  + L+ I KK
Sbjct: 578 VLALLLESCGRFLLRYPETKLQMQSFLEAIQKK 610


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -3

Query: 260  KEICFKLKLLGNCLKFLIDXXPKEPIRTSL--VCFN 159
            K IC+KL   G   K ++   P E +RT+L  VC N
Sbjct: 928  KGICYKLYTRGFEEKGMLGQTPPEVLRTALSQVCLN 963


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,661,656
Number of Sequences: 5004
Number of extensions: 80360
Number of successful extensions: 192
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 507285244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)