Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_F21
         (985 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47083| Best HMM Match : No HMM Matches (HMM E-Value=.)             199   2e-51
SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0)                     46   6e-05
SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)               30   2.5  

>SB_47083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 211

 Score =  199 bits (486), Expect = 2e-51
 Identities = 94/152 (61%), Positives = 117/152 (76%)
 Frame = +1

Query: 364 KRIDLDHLECLNEIPLEGSGKSVFKPWDKKNWIEAKFVESDTDEELLFNIPFTGNIKLKG 543
           ++IDL  L+CLNE   EGSGK VFK WD++     KFVESD DEELLFNIPFTG++KLK 
Sbjct: 33  QKIDLFRLQCLNEAE-EGSGKDVFKSWDER-LDTTKFVESDVDEELLFNIPFTGSVKLKA 90

Query: 544 IKVASEDTDSHPSKLRLFKNRPNMTFDDVMIEPDQVFELQKDTDGILEYCPKIVTFSSVS 723
           + V   +   HPS+++LFKNRP MTFDD   E +Q FEL +D +G LEY  K+  FSSV+
Sbjct: 91  LIVIGGEGGEHPSEVKLFKNRPAMTFDDAGSEAEQSFELHEDRNGSLEYATKVARFSSVN 150

Query: 724 HLTMHFPKNFGAETTKIYYIGLKGEWTPSHRH 819
           HL+++FPKNFGAETTKIYYIGLKGE++ +HRH
Sbjct: 151 HLSLYFPKNFGAETTKIYYIGLKGEFSEAHRH 182


>SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0)
          Length = 308

 Score = 45.6 bits (103), Expect = 6e-05
 Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
 Frame = +1

Query: 472 FVESDTDEELLFNIPFTGNIKLKGIKVASEDTDSHPSKLRLFKNR-PNMTFDDV-MIEPD 645
           F++SD DE+LL ++ F   +KL  +K+ + +    P  ++LF N+  ++ FD     +  
Sbjct: 160 FLQSDCDEQLLISLSFNQPVKLHSMKLQAPNDGQAPKVVKLFINQTKSLDFDSAENFQAI 219

Query: 646 QVFEL-QKDTDGILEYCPKIVTFSSVSHLTMHFPKNFG-AETTKIYYIGLKG 795
           Q  EL  +D    +    K V   +V +LT+    N G  E + I Y+G+ G
Sbjct: 220 QTLELTPEDVQEDVIIPLKFVKLQNVLNLTLFVKSNQGNEELSVINYLGIIG 271


>SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)
          Length = 4240

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
 Frame = +1

Query: 508  NIPF--TGNIKLKGIKVASEDTDSHPSKLRLFKNRPNMTFDDVMIEPDQVFELQKDTDGI 681
            ++PF    N+++ G  V  +D++     L   +N+ + T+DD+M + DQ  E +K++   
Sbjct: 1160 DVPFDHASNVRINGQSV-EDDSERFVRSLERKRNKIDNTWDDIMKDIDQHPERRKESISN 1218

Query: 682  LEYCPK 699
            + Y  K
Sbjct: 1219 VRYDSK 1224


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,652,962
Number of Sequences: 59808
Number of extensions: 526376
Number of successful extensions: 1010
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2919714245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)