Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_F21
         (985 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25950.1 68415.m03115 expressed protein                            123   2e-28
At3g04780.1 68416.m00515 expressed protein                             56   3e-08
At5g51850.1 68418.m06428 expressed protein similar to unknown pr...    30   2.7  
At5g45095.1 68418.m05532 expressed protein                             29   3.6  
At3g47030.1 68416.m05107 F-box family protein contains F-box dom...    28   8.3  
At3g46420.1 68416.m05032 leucine-rich repeat family protein / pr...    28   8.3  

>At2g25950.1 68415.m03115 expressed protein
          Length = 204

 Score =  123 bits (297), Expect = 2e-28
 Identities = 64/153 (41%), Positives = 94/153 (61%), Gaps = 2/153 (1%)
 Frame = +1

Query: 364 KRIDLDHLECLNEIPLEGSGKSVFKPWDKKNWIEAKFVESDT-DEELLFNIPFTGNIKLK 540
           K IDL  +  LNE  + GS KSVFK W+++     + +ES+  D ELL  +PFT ++K+K
Sbjct: 22  KHIDLSKVSALNE-SVSGSAKSVFKAWEQRLHSSGEHLESNEGDPELLVFVPFTSDVKIK 80

Query: 541 GIKVASEDTDSHPSKLRLFKNRPNMTFDDV-MIEPDQVFELQKDTDGILEYCPKIVTFSS 717
            I +      + PSKLR+F NR  + F D   ++  Q +EL ++  G+LEY  +   F S
Sbjct: 81  SISIVGGPEGTSPSKLRVFINREGIDFSDAESMQAVQEWELAENLQGVLEYQTRYSKFQS 140

Query: 718 VSHLTMHFPKNFGAETTKIYYIGLKGEWTPSHR 816
           V ++T+HFP++FG +TT+I YIG KGE T   R
Sbjct: 141 VGNITLHFPESFGGDTTQIRYIGFKGEATQLKR 173


>At3g04780.1 68416.m00515 expressed protein
          Length = 176

 Score = 56.4 bits (130), Expect = 3e-08
 Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 2/144 (1%)
 Frame = +1

Query: 370 IDLDHLECLNEIPLEGSGKSVFKPWDKKNWIEAKFVESDTDEELLFNIPFTGNIKLKGIK 549
           ID   +ECLN+        ++ + + +   +    +ESD DE+LL  IPF   IKL    
Sbjct: 20  IDWSGVECLNQSSSHSLPNALKQGYREDEGLN---LESDADEQLLIYIPFNQVIKLHSFA 76

Query: 550 VASEDTDSHPSKLRLFKNRPNMTFDDVM-IEPDQVFELQKDTDGILEYCPKIVTFSSVSH 726
           +   + +  P  ++ F N+ +M F +V    P    EL ++         K V F +V  
Sbjct: 77  IKGPEEEG-PKTVKFFSNKEHMCFSNVNDFPPSDTAELTEENLKGKPVVLKYVKFQNVRS 135

Query: 727 LTMHFPKN-FGAETTKIYYIGLKG 795
           LT+    N  G+E TK+  I L G
Sbjct: 136 LTIFIEANQSGSEVTKVQKIALYG 159


>At5g51850.1 68418.m06428 expressed protein similar to unknown
           protein (emb|CAB81354.1)
          Length = 590

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +1

Query: 208 IKNFKQFPKSFNLKQISLTKKCSQSIN 288
           IK FK+ PKS +L+ IS T+   Q IN
Sbjct: 361 IKKFKKIPKSNDLENISATRPPHQQIN 387


>At5g45095.1 68418.m05532 expressed protein 
          Length = 394

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = -3

Query: 254 ICFKLKLLGNCLKFLIDXXPKEPIRTSLVCFNCFNFVFELDXKMTTHQFWRIFWI 90
           +CFK+ L  +CL  L+D      +R+    + CF F+  L   +   +F+ + WI
Sbjct: 340 VCFKM-LFSSCLLALLD------LRSYYRIYLCFAFLNALSFDVLNSEFFELLWI 387


>At3g47030.1 68416.m05107 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 414

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
 Frame = +1

Query: 589 RLFKNRPNMTFDDVMIEPDQVFELQKDTDGILEYCPK---IVTFSSVS-HLTMHFPKNFG 756
           ++   RP + F  +       + + +D D    Y P     +++S +S H  MHFPK  G
Sbjct: 76  KMSSTRPRILFTFLYYGKRLFYSMPQDLDPSNHYSPLPYFSISYSPISAHYQMHFPKVLG 135

Query: 757 A 759
           A
Sbjct: 136 A 136


>At3g46420.1 68416.m05032 leucine-rich repeat family protein /
           protein kinase family protein contains leucine rich
           repeat (LRR) domains, INTERPRO:IPR001611; contains
           serine/threonine protein kinases active-site signature,
           Prosite:PS00108
          Length = 838

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = +3

Query: 708 IFFSITSNNALSKELWGRNNKNLLHWIKRRMDT*S*AWVLPYAHMRVMPNLXDHKV 875
           + +   SN  L   L GRNN  +L W  R       A  L Y H+   P++    V
Sbjct: 602 LVYEYMSNGDLKHHLSGRNNGFVLSWSTRLQIAVDAALGLEYLHIGCRPSMVHRDV 657


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,600,612
Number of Sequences: 28952
Number of extensions: 393229
Number of successful extensions: 933
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2392460208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)