Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_F19
         (901 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    30   0.52 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.68 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   1.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.6  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   4.8  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   4.8  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   4.8  

>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 724 GGXGXGXXPPPPPPPPXXFXFF 789
           G    G  PPPPPPPP    F+
Sbjct: 298 GDSANGGLPPPPPPPPPSNDFW 319



 Score = 29.5 bits (63), Expect = 0.68
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +3

Query: 738 GXXXPPPPPPPXXXXFFFXLXXPPPXXKK 824
           G   PPPPPPP    F+     P P   K
Sbjct: 303 GGLPPPPPPPPPSNDFWKDSNEPAPADNK 331


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 477 PPXXPPPPPPXXXXPPP 427
           PP  PPPPPP     PP
Sbjct: 5   PPGNPPPPPPPPGFEPP 21



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/20 (55%), Positives = 11/20 (55%), Gaps = 3/20 (15%)
 Frame = -3

Query: 476 PPXXPPPP---PXGXXPPPP 426
           PP  PPPP   P    PPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPP 28



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 748 PPPPPPPP 771
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
 Frame = -3

Query: 476 PPXXPP---PPPXGXXPPPPGXKKXXXXK 399
           PP  PP   PP     PPPPG  K    K
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGYVKKRKNK 39



 Score = 25.8 bits (54), Expect = 8.4
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2

Query: 477 PPXXPPPPPP 448
           PP  PPPPPP
Sbjct: 20  PPSQPPPPPP 29


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 748 PPPPPPPP 771
           PPPPPPPP
Sbjct: 189 PPPPPPPP 196



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 748 PPPPPPPP 771
           PPPPPPPP
Sbjct: 190 PPPPPPPP 197



 Score = 23.8 bits (49), Expect(2) = 1.2
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -2

Query: 474 PXXPPPPPPXXXXPP 430
           P   PPPPP    PP
Sbjct: 234 PLPAPPPPPPPTLPP 248



 Score = 23.0 bits (47), Expect(2) = 1.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 477 PPXXPPPPP 451
           PP  PPPPP
Sbjct: 189 PPPPPPPPP 197



 Score = 23.0 bits (47), Expect(2) = 9.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 474 PXXPPPPPP 448
           P  PPPPPP
Sbjct: 189 PPPPPPPPP 197



 Score = 23.0 bits (47), Expect(2) = 9.4
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -2

Query: 477 PPXXPPPPPPXXXXP 433
           P   PPPPPP    P
Sbjct: 234 PLPAPPPPPPPTLPP 248



 Score = 20.6 bits (41), Expect(2) = 9.4
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -2

Query: 486 FXXPPXXPPPP 454
           +  PP  PPPP
Sbjct: 187 YNPPPPPPPPP 197



 Score = 20.6 bits (41), Expect(2) = 9.4
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -2

Query: 465 PPPPPPXXXXPPP 427
           P PPPP     PP
Sbjct: 236 PAPPPPPPPTLPP 248


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 476 PPXXPPPPPXGXXPPPP 426
           PP  PPP   G  PPPP
Sbjct: 762 PPPPPPPGVAGAGPPPP 778



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +1

Query: 724 GGXGXGXXPPPPPPP 768
           G  G G  PPPPPPP
Sbjct: 769 GVAGAGPPPPPPPPP 783



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +1

Query: 739 GXXPPPPPPPP 771
           G  PPPPPPPP
Sbjct: 772 GAGPPPPPPPP 782



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = -2

Query: 477 PPXXPPPPPPXXXXPPPXXKKXXXXKKXGXXXXXGAPQ 364
           PP  PPPP      PPP           G      APQ
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQ 798



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 727 GXGXGXXPPPPPPPP 771
           G      PPPPPPPP
Sbjct: 769 GVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 748 PPPPPPPP 771
           PPPPPPPP
Sbjct: 761 PPPPPPPP 768


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 748  PPPPPPPP 771
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 748 PPPPPPPP 771
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 748 PPPPPPPP 771
           PPPPPPPP
Sbjct: 945 PPPPPPPP 952



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 748 PPPPPPPP 771
           PPPPPPPP
Sbjct: 946 PPPPPPPP 953


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,014,185
Number of Sequences: 5004
Number of extensions: 27261
Number of successful extensions: 404
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)