Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_F18
         (924 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    27   3.7  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    27   4.9  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      27   4.9  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    26   6.5  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    26   6.5  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    26   8.6  
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch...    26   8.6  

>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 373 WFWDDKLEVLDNNVGM 326
           WF ++ LE+LD NVG+
Sbjct: 496 WFLEEDLEILDENVGI 511


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 370 FWDDKLEVLDNNVGMP 323
           FW D++ +LD N GMP
Sbjct: 214 FWVDRIVILDKNGGMP 229


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -2

Query: 590  GSTPNYSHRPRRMLLMQTAAADDQRLSIGQPTQPGIRMVTPRSQ 459
            G   + SH P++  L  T +AD+    I + T P +++ +PR +
Sbjct: 1405 GVLVSISHMPQKEKLYITISADEVGKFILEATSPTVKVSSPRCE 1448


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 590 RGSVDRRILPHLHDRRSPVSL 652
           RG   R +LP+LH  RSP SL
Sbjct: 142 RGRKIRVMLPYLHSLRSPTSL 162


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +3

Query: 384 INKALLCTSIYYASNLFEILASLSRLTPRSNHPYPGLCRLSNGETLVISGCC 539
           + K +L  S+  A + FEI ASL  L    +   P    L N   + I+ CC
Sbjct: 454 LKKLVLHDSLALAPHFFEIFASLPEL---EHLEIPDNVALQNKHAIHITDCC 502


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 388 TKHYFVPAFITHQISSRY*RP 450
           TKHY V +F  HQ+ + Y +P
Sbjct: 158 TKHYHVKSFRIHQLLALYQKP 178


>SPBC3F6.01c |||serine/threonine protein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -3

Query: 538 QQPLMTSVSPLDNLHSPGYGWLLRGVNLERDASISKRF 425
           Q  LM  +   D   +PG G   RGV L+    +SKRF
Sbjct: 354 QSGLMMEMLWTDPQPAPGRGPSKRGVGLQFGPDVSKRF 391


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,346,565
Number of Sequences: 5004
Number of extensions: 64285
Number of successful extensions: 134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)