BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_F18 (924 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 27 3.7 SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom... 27 4.9 SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 27 4.9 SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 26 6.5 SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 26 6.5 SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo... 26 8.6 SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch... 26 8.6 >SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces pombe|chr 2|||Manual Length = 517 Score = 27.1 bits (57), Expect = 3.7 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = -3 Query: 373 WFWDDKLEVLDNNVGM 326 WF ++ LE+LD NVG+ Sbjct: 496 WFLEEDLEILDENVGI 511 >SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharomyces pombe|chr 2|||Manual Length = 500 Score = 26.6 bits (56), Expect = 4.9 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = -3 Query: 370 FWDDKLEVLDNNVGMP 323 FW D++ +LD N GMP Sbjct: 214 FWVDRIVILDKNGGMP 229 >SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual Length = 1489 Score = 26.6 bits (56), Expect = 4.9 Identities = 13/44 (29%), Positives = 24/44 (54%) Frame = -2 Query: 590 GSTPNYSHRPRRMLLMQTAAADDQRLSIGQPTQPGIRMVTPRSQ 459 G + SH P++ L T +AD+ I + T P +++ +PR + Sbjct: 1405 GVLVSISHMPQKEKLYITISADEVGKFILEATSPTVKVSSPRCE 1448 >SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosaccharomyces pombe|chr 1|||Manual Length = 841 Score = 26.2 bits (55), Expect = 6.5 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = +2 Query: 590 RGSVDRRILPHLHDRRSPVSL 652 RG R +LP+LH RSP SL Sbjct: 142 RGRKIRVMLPYLHSLRSPTSL 162 >SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr 3|||Manual Length = 577 Score = 26.2 bits (55), Expect = 6.5 Identities = 17/52 (32%), Positives = 24/52 (46%) Frame = +3 Query: 384 INKALLCTSIYYASNLFEILASLSRLTPRSNHPYPGLCRLSNGETLVISGCC 539 + K +L S+ A + FEI ASL L + P L N + I+ CC Sbjct: 454 LKKLVLHDSLALAPHFFEIFASLPEL---EHLEIPDNVALQNKHAIHITDCC 502 >SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharomyces pombe|chr 1|||Manual Length = 672 Score = 25.8 bits (54), Expect = 8.6 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +1 Query: 388 TKHYFVPAFITHQISSRY*RP 450 TKHY V +F HQ+ + Y +P Sbjct: 158 TKHYHVKSFRIHQLLALYQKP 178 >SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosaccharomyces pombe|chr 2|||Manual Length = 473 Score = 25.8 bits (54), Expect = 8.6 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = -3 Query: 538 QQPLMTSVSPLDNLHSPGYGWLLRGVNLERDASISKRF 425 Q LM + D +PG G RGV L+ +SKRF Sbjct: 354 QSGLMMEMLWTDPQPAPGRGPSKRGVGLQFGPDVSKRF 391 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,346,565 Number of Sequences: 5004 Number of extensions: 64285 Number of successful extensions: 134 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 133 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 134 length of database: 2,362,478 effective HSP length: 73 effective length of database: 1,997,186 effective search space used: 467341524 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -