Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_F18
         (924 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9266| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   7e-04
SB_52116| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.0  

>SB_9266| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1490

 Score = 31.5 bits (68), Expect(2) = 7e-04
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = -3

Query: 910  NIIFHHTKAXYKPPEKG---AAYPMHPRLSXFPVRKRLNXASFLHLDAADPK 764
            N++  HT    KPP+ G   + +P+H  L  FP R   + ++ +H     P+
Sbjct: 1178 NVMAVHTMLINKPPDPGTKTSRHPLHQDLHYFPFRPANSLSTLVHYHPRRPR 1229



 Score = 29.5 bits (63), Expect(2) = 7e-04
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 766  KNGCLYVYPGSHKLDLRK 713
            +NGCL V PG+HK +L K
Sbjct: 1268 QNGCLVVLPGTHKTELLK 1285


>SB_52116| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1084

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 498 YTARDTDGYSEESTLKGTLVSRRD 427
           +  RDTD Y EE    GT+V +R+
Sbjct: 626 FLVRDTDNYDEERLTDGTIVYKRE 649


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,593,643
Number of Sequences: 59808
Number of extensions: 490635
Number of successful extensions: 992
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2681370225
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)