Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_F17
         (1162 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33595| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.25 
SB_8730| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.25 
SB_29737| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.44 
SB_21722| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.44 
SB_48113| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.44 
SB_17601| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.44 
SB_466| Best HMM Match : No HMM Matches (HMM E-Value=.)                33   0.44 
SB_59302| Best HMM Match : Collagen (HMM E-Value=0)                    31   2.3  

>SB_33595| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 901

 Score = 33.9 bits (74), Expect = 0.25
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -2

Query: 843 VXXGGXAFGKXPXNRPFXXFWPF 775
           V  GG A+GK P  RPF   WPF
Sbjct: 756 VKRGGGAYGKTPATRPFYGSWPF 778


>SB_8730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 83

 Score = 33.9 bits (74), Expect = 0.25
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -2

Query: 843 VXXGGXAFGKXPXNRPFXXFWPF 775
           V  GG A+GK P  RPF   WPF
Sbjct: 20  VGQGGGAYGKTPATRPFYGSWPF 42


>SB_29737| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 33.1 bits (72), Expect = 0.44
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -2

Query: 834 GGXAFGKXPXNRPFXXFWPF 775
           GG A+GK P  RPF   WPF
Sbjct: 1   GGGAYGKTPATRPFYGSWPF 20


>SB_21722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 284

 Score = 33.1 bits (72), Expect = 0.44
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -2

Query: 834 GGXAFGKXPXNRPFXXFWPF 775
           GG A+GK P  RPF   WPF
Sbjct: 24  GGGAYGKTPATRPFYGSWPF 43


>SB_48113| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 466

 Score = 33.1 bits (72), Expect = 0.44
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -2

Query: 834 GGXAFGKXPXNRPFXXFWPF 775
           GG A+GK P  RPF   WPF
Sbjct: 406 GGGAYGKTPATRPFYGSWPF 425


>SB_17601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 649

 Score = 33.1 bits (72), Expect = 0.44
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -2

Query: 834 GGXAFGKXPXNRPFXXFWPF 775
           GG A+GK P  RPF   WPF
Sbjct: 555 GGGAYGKTPATRPFYGSWPF 574


>SB_466| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 33.1 bits (72), Expect = 0.44
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -2

Query: 834 GGXAFGKXPXNRPFXXFWPF 775
           GG A+GK P  RPF   WPF
Sbjct: 1   GGGAYGKTPATRPFYGSWPF 20


>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 993

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
 Frame = -1

Query: 535 GXPXXLGNXANXSX----DSFXGPNAPLXPXXXPG--GGXGNLGPXXXSPPTLLPGIQXX 374
           G P   GN  N +     +   GPN PL P   PG  G  G  GP     P   PG+   
Sbjct: 158 GGPGLQGNHGNPAGIQGPNGLPGPNGPLGPPGPPGDMGPPGLPGPQGPQMPPGPPGLPGA 217

Query: 373 IWLXGP 356
               GP
Sbjct: 218 PGPKGP 223


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,064,010
Number of Sequences: 59808
Number of extensions: 227143
Number of successful extensions: 276
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 16,821,457
effective HSP length: 83
effective length of database: 11,857,393
effective search space used: 3592790079
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)