Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_F17
         (1162 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024811-5|AAF60775.1|  285|Caenorhabditis elegans Collagen prot...    31   2.1  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   8.3  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   8.3  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   8.3  

>AC024811-5|AAF60775.1|  285|Caenorhabditis elegans Collagen protein
           48 protein.
          Length = 285

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 18/46 (39%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
 Frame = -1

Query: 517 GNXANXSXDSFXGPNAPLXPXXXPG--GGXGNLGPXXXSPPTLLPG 386
           GN      D   GP  P  P   PG  G  G  GP    P  LLPG
Sbjct: 161 GNPGRNGEDGAPGPQGPSGPPGPPGQPGQPGQRGP-PGEPGALLPG 205


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
            protein 1, isoformb protein.
          Length = 1437

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 28/102 (27%), Positives = 33/102 (32%)
 Frame = +3

Query: 852  GSAXXPPRVGGTPXXPYKEYQXVFPLGNLPXCAPPXFXXLPXLPXXPXPPFLPFXEXVAX 1031
            GS+  PP  GG P  P      + P+   P   PP    LP +   P PP  P    +  
Sbjct: 702  GSSALPPITGGPPPPP-----GLPPITGGPPPPPPP-GGLPPITGGPPPP--PPPGGLPP 753

Query: 1032 FLXNXTLXGIPXFXC*GXSPXQXXGXFWQXTPPXSXPNPXAP 1157
                      P   C    P    G F    PP   P   AP
Sbjct: 754  ISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 795


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
            protein 1, isoforma protein.
          Length = 1435

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 28/102 (27%), Positives = 33/102 (32%)
 Frame = +3

Query: 852  GSAXXPPRVGGTPXXPYKEYQXVFPLGNLPXCAPPXFXXLPXLPXXPXPPFLPFXEXVAX 1031
            GS+  PP  GG P  P      + P+   P   PP    LP +   P PP  P    +  
Sbjct: 702  GSSALPPITGGPPPPP-----GLPPITGGPPPPPPP-GGLPPITGGPPPP--PPPGGLPP 753

Query: 1032 FLXNXTLXGIPXFXC*GXSPXQXXGXFWQXTPPXSXPNPXAP 1157
                      P   C    P    G F    PP   P   AP
Sbjct: 754  ISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 795


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 28/102 (27%), Positives = 33/102 (32%)
 Frame = +3

Query: 852  GSAXXPPRVGGTPXXPYKEYQXVFPLGNLPXCAPPXFXXLPXLPXXPXPPFLPFXEXVAX 1031
            GS+  PP  GG P  P      + P+   P   PP    LP +   P PP  P    +  
Sbjct: 285  GSSALPPITGGPPPPP-----GLPPITGGPPPPPPP-GGLPPITGGPPPP--PPPGGLPP 336

Query: 1032 FLXNXTLXGIPXFXC*GXSPXQXXGXFWQXTPPXSXPNPXAP 1157
                      P   C    P    G F    PP   P   AP
Sbjct: 337  ISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 378


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,134,958
Number of Sequences: 27780
Number of extensions: 202313
Number of successful extensions: 414
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3161640774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)