Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_F17
         (1162 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64450.1 68414.m07306 proline-rich family protein contains pr...    33   0.36 
At3g50570.1 68416.m05531 hydroxyproline-rich glycoprotein family...    31   1.1  
At2g16630.1 68415.m01909 proline-rich family protein contains pr...    29   5.8  

>At1g64450.1 68414.m07306 proline-rich family protein contains proline
            rich extensins, INTERPRO:IPR0002965
          Length = 342

 Score = 33.1 bits (72), Expect = 0.36
 Identities = 18/46 (39%), Positives = 19/46 (41%)
 Frame = +3

Query: 867  PPRVGGTPXXPYKEYQXVFPLGNLPXCAPPXFXXLPXLPXXPXPPF 1004
            PPR  G P  P      VFP GN     PP F  +   P  P  PF
Sbjct: 226  PPRNPGAPVIPRNPNPPVFP-GNPRSMGPPGFPGIGGPPGFPGTPF 270


>At3g50570.1 68416.m05531 hydroxyproline-rich glycoprotein family
            protein contains proline-rich protein domains,
            INTERPRO:IPR000694
          Length = 189

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 21/68 (30%), Positives = 25/68 (36%)
 Frame = +3

Query: 801  GWXXFSQRXXPLEXXSXGSAXXPPRVGGTPXXPYKEYQXVFPLGNLPXCAPPXFXXLPXL 980
            GW   S           GS    P++ G P  P       FP  N+P    P    LP +
Sbjct: 47   GWACSSSSDPNTPPSPPGSFPNIPQIPGIPNIP-------FP--NIPGIPIPNIPGLPNI 97

Query: 981  PXXPXPPF 1004
            P  P PPF
Sbjct: 98   PGLPGPPF 105


>At2g16630.1 68415.m01909 proline-rich family protein contains
            proline-rich extensin domains, INTERPRO:IPR002965
          Length = 359

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +3

Query: 867  PPRVGG-TPXXPYKEYQXVFPLGNLPXCAPPXFXXLPXLPXXPXPPFL 1007
            PP+V   +P  P      + P+ NLP    P    LP LP  P  PF+
Sbjct: 191  PPKVPVISPDPPTTLPPPLVPVINLPPVTSPPQFKLPPLPQIPPMPFV 238


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,745,530
Number of Sequences: 28952
Number of extensions: 180386
Number of successful extensions: 237
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 12,070,560
effective HSP length: 82
effective length of database: 9,696,496
effective search space used: 2947734784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)