Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_F16
         (1020 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.34 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.60 
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    28   1.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   5.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   7.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.34
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +3

Query: 633 PXRPXKGPQXP*XRPPAXXGVFXXXPPPPPP 725
           P  P  G   P   PP   G     PPPPPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.60
 Identities = 22/75 (29%), Positives = 24/75 (32%)
 Frame = +3

Query: 633 PXRPXKGPQXP*XRPPAXXGVFXXXPPPPPPXKXXXPXXXPAPXLKXGXXTPRPXFLXXS 812
           P  P   P  P   PP+         P  PP     P    AP L  G     P  L  +
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPI---APPLPAGMPAAPP--LPPA 472

Query: 813 XPXXXPAXTPLPGXP 857
            P   PA  P P  P
Sbjct: 473 APAPPPAPAPAPAAP 487



 Score = 27.1 bits (57), Expect = 4.2
 Identities = 20/74 (27%), Positives = 25/74 (33%), Gaps = 6/74 (8%)
 Frame = +1

Query: 712 PPPPPGKXXYXNXXPRPXLKXGQXPPARXFXPXXXXXPXRXK-LPSXAXPXXXPAX---- 876
           P PP G+       PR     G+ PP           P     +P  + P   P      
Sbjct: 352 PLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASR 411

Query: 877 -AFPPXXRPPXLPP 915
            + PP   PP LPP
Sbjct: 412 TSTPPVPTPPSLPP 425



 Score = 25.8 bits (54), Expect = 9.8
 Identities = 20/84 (23%), Positives = 26/84 (30%), Gaps = 2/84 (2%)
 Frame = +3

Query: 642 PXKGPQXP*XRPPAXX-GVFXXXPPP-PPPXKXXXPXXXPAPXLKXGXXTPRPXFLXXSX 815
           P   P  P  RPP     +    PPP PPP          +P       +  P     S 
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSK 289

Query: 816 PXXXPAXTPLPGXPXLXTRXRFPP 887
           P   P  + +        + R PP
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPP 313


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +3

Query: 678 PAXXGVFXXXPPPPPPXKXXXPXXXPAPXLKXGXXTP 788
           PA        PPPPP      P   PAP       TP
Sbjct: 734 PAPTPAVKHHPPPPPVRSSISPSMPPAPLTHANSSTP 770


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 838  LPSXAXPXXXPAXAFPPXXRPPXLPP 915
            +PS A P   P+ A PP   P   PP
Sbjct: 1135 VPSGAPPVPKPSVAAPPVPAPSGAPP 1160



 Score = 25.8 bits (54), Expect = 9.8
 Identities = 20/68 (29%), Positives = 21/68 (30%)
 Frame = +1

Query: 712  PPPPPGKXXYXNXXPRPXLKXGQXPPARXFXPXXXXXPXRXKLPSXAXPXXXPAXAFPPX 891
            PPP P         P P       PP     P     P   K    A P   P+ A PP 
Sbjct: 1063 PPPVPAPSSEIPSIPAP----SGAPPV----PAPSGIPPVPKPSVAAPPVPKPSVAVPPV 1114

Query: 892  XRPPXLPP 915
              P   PP
Sbjct: 1115 PAPSGAPP 1122


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +3

Query: 708 PPPPPPXKXXXPXXXPAPXLKXGXXTPR 791
           PPPPPP     P   P P    G    R
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPGYVKKR 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.143    0.474 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,678,039
Number of Sequences: 5004
Number of extensions: 15613
Number of successful extensions: 103
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 531251476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)