Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_F16
(1020 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 35 0.081
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 35 0.081
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 35 0.081
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 35 0.11
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 35 0.11
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 34 0.19
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 34 0.19
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 34 0.19
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 33 0.25
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 32 0.76
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 32 0.76
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 31 1.7
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 31 1.7
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 31 1.7
AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical ... 31 1.7
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 30 2.3
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 30 2.3
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 30 2.3
U58753-8|AAC24439.1| 633|Caenorhabditis elegans Hypothetical pr... 27 3.6
U58753-7|AAC24433.1| 581|Caenorhabditis elegans Hypothetical pr... 27 3.6
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 29 4.0
AL132898-7|CAC14410.1| 413|Caenorhabditis elegans Hypothetical ... 29 4.0
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 29 5.3
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 29 5.3
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 29 5.3
AF016682-4|AAB66185.1| 263|Caenorhabditis elegans Hypothetical ... 29 5.3
AC006666-4|AAK21415.1| 109|Caenorhabditis elegans Hypothetical ... 29 5.3
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 29 7.0
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 7.0
Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical pr... 29 7.0
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 29 7.0
AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical... 29 7.0
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 28 9.3
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 28 9.3
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 28 9.3
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 28 9.3
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 28 9.3
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 28 9.3
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 35.1 bits (77), Expect = 0.081
Identities = 36/172 (20%), Positives = 47/172 (27%), Gaps = 3/172 (1%)
Frame = +1
Query: 397 FSXXXGXXGXXFXDXKXGXXPREKXVSXXGPLSPXXPKXNXPPPGSXXWGXGXXPXIXXG 576
F G F + G +++ + P + PPP G P G
Sbjct: 197 FGGNQGVTASGFGGQQQGFGQQQQTQNGFRGKRQAPPAGSPPPPPPPK---GSPPLAGSG 253
Query: 577 XXGXSXKXXGXTPXKKXXPXXGPXRGPXXRKXG---PPLXLGFFXXXRPPPPPGKXXYXN 747
P + P P P G PP G PPPPP
Sbjct: 254 SPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAG-----SPPPPPPPRGSPP 308
Query: 748 XXPRPXLKXGQXPPARXFXPXXXXXPXRXKLPSXAXPXXXPAXAFPPXXRPP 903
P + G PP + + P + P P PP RPP
Sbjct: 309 TGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRPP 360
Score = 31.1 bits (67), Expect = 1.3
Identities = 20/69 (28%), Positives = 23/69 (33%), Gaps = 1/69 (1%)
Frame = +1
Query: 712 PPPPPGKXXYX-NXXPRPXLKXGQXPPARXFXPXXXXXPXRXKLPSXAXPXXXPAXAFPP 888
PPPP G + P P G PP R P P+ P A + PP
Sbjct: 240 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 299
Query: 889 XXRPPXLPP 915
P PP
Sbjct: 300 PPPPRGSPP 308
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 35.1 bits (77), Expect = 0.081
Identities = 36/172 (20%), Positives = 47/172 (27%), Gaps = 3/172 (1%)
Frame = +1
Query: 397 FSXXXGXXGXXFXDXKXGXXPREKXVSXXGPLSPXXPKXNXPPPGSXXWGXGXXPXIXXG 576
F G F + G +++ + P + PPP G P G
Sbjct: 218 FGGNQGVTASGFGGQQQGFGQQQQTQNGFRGKRQAPPAGSPPPPPPPK---GSPPLAGSG 274
Query: 577 XXGXSXKXXGXTPXKKXXPXXGPXRGPXXRKXG---PPLXLGFFXXXRPPPPPGKXXYXN 747
P + P P P G PP G PPPPP
Sbjct: 275 SPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAG-----SPPPPPPPRGSPP 329
Query: 748 XXPRPXLKXGQXPPARXFXPXXXXXPXRXKLPSXAXPXXXPAXAFPPXXRPP 903
P + G PP + + P + P P PP RPP
Sbjct: 330 TGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRPP 381
Score = 31.1 bits (67), Expect = 1.3
Identities = 20/69 (28%), Positives = 23/69 (33%), Gaps = 1/69 (1%)
Frame = +1
Query: 712 PPPPPGKXXYX-NXXPRPXLKXGQXPPARXFXPXXXXXPXRXKLPSXAXPXXXPAXAFPP 888
PPPP G + P P G PP R P P+ P A + PP
Sbjct: 261 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 320
Query: 889 XXRPPXLPP 915
P PP
Sbjct: 321 PPPPRGSPP 329
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 35.1 bits (77), Expect = 0.081
Identities = 36/172 (20%), Positives = 47/172 (27%), Gaps = 3/172 (1%)
Frame = +1
Query: 397 FSXXXGXXGXXFXDXKXGXXPREKXVSXXGPLSPXXPKXNXPPPGSXXWGXGXXPXIXXG 576
F G F + G +++ + P + PPP G P G
Sbjct: 203 FGGNQGVTASGFGGQQQGFGQQQQTQNGFRGKRQAPPAGSPPPPPPPK---GSPPLAGSG 259
Query: 577 XXGXSXKXXGXTPXKKXXPXXGPXRGPXXRKXG---PPLXLGFFXXXRPPPPPGKXXYXN 747
P + P P P G PP G PPPPP
Sbjct: 260 SPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAG-----SPPPPPPPRGSPP 314
Query: 748 XXPRPXLKXGQXPPARXFXPXXXXXPXRXKLPSXAXPXXXPAXAFPPXXRPP 903
P + G PP + + P + P P PP RPP
Sbjct: 315 TGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRPP 366
Score = 31.1 bits (67), Expect = 1.3
Identities = 20/69 (28%), Positives = 23/69 (33%), Gaps = 1/69 (1%)
Frame = +1
Query: 712 PPPPPGKXXYX-NXXPRPXLKXGQXPPARXFXPXXXXXPXRXKLPSXAXPXXXPAXAFPP 888
PPPP G + P P G PP R P P+ P A + PP
Sbjct: 246 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 305
Query: 889 XXRPPXLPP 915
P PP
Sbjct: 306 PPPPRGSPP 314
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 34.7 bits (76), Expect = 0.11
Identities = 20/70 (28%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Frame = +3
Query: 690 GVFXXXPPPPPPXKXXXPXXXPAPXLKXGXXTPRPXFLXXSXPXXXPAXTP----LPGXP 857
G + PPPPP P P P + P + P P TP +PG P
Sbjct: 258 GQYPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMP 317
Query: 858 XLXTRXRFPP 887
RF P
Sbjct: 318 PPPPPSRFGP 327
Score = 30.3 bits (65), Expect = 2.3
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +3
Query: 642 PXKGPQXP*XRPPAXXGVFXXXPPPPPP 725
P P P RPPA PPPPPP
Sbjct: 360 PGMYPPPPPSRPPAPPSGHGMIPPPPPP 387
Score = 29.1 bits (62), Expect = 5.3
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Frame = +3
Query: 633 PXRPXKGPQXP*XRPPAXXGVFXXXPPPPP---PXKXXXPXXXPAP 761
P P P+ P PP G++ PPPPP P P P P
Sbjct: 278 PPTPGMTPRPP---PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPP 320
Score = 28.3 bits (60), Expect = 9.3
Identities = 21/80 (26%), Positives = 21/80 (26%)
Frame = +1
Query: 487 PLSPXXPKXNXPPPGSXXWGXGXXPXIXXGXXGXSXKXXGXTPXKKXXPXXGPXRGPXXR 666
P P P PPP S G G P P GP P
Sbjct: 308 PGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPP 367
Query: 667 KXGPPLXLGFFXXXRPPPPP 726
PP PPPPP
Sbjct: 368 PSRPPAPPSGHGMIPPPPPP 387
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 34.7 bits (76), Expect = 0.11
Identities = 20/70 (28%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Frame = +3
Query: 690 GVFXXXPPPPPPXKXXXPXXXPAPXLKXGXXTPRPXFLXXSXPXXXPAXTP----LPGXP 857
G + PPPPP P P P + P + P P TP +PG P
Sbjct: 268 GQYPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMP 327
Query: 858 XLXTRXRFPP 887
RF P
Sbjct: 328 PPPPPSRFGP 337
Score = 30.3 bits (65), Expect = 2.3
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +3
Query: 642 PXKGPQXP*XRPPAXXGVFXXXPPPPPP 725
P P P RPPA PPPPPP
Sbjct: 370 PGMYPPPPPSRPPAPPSGHGMIPPPPPP 397
Score = 29.1 bits (62), Expect = 5.3
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Frame = +3
Query: 633 PXRPXKGPQXP*XRPPAXXGVFXXXPPPPP---PXKXXXPXXXPAP 761
P P P+ P PP G++ PPPPP P P P P
Sbjct: 288 PPTPGMTPRPP---PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPP 330
Score = 28.3 bits (60), Expect = 9.3
Identities = 21/80 (26%), Positives = 21/80 (26%)
Frame = +1
Query: 487 PLSPXXPKXNXPPPGSXXWGXGXXPXIXXGXXGXSXKXXGXTPXKKXXPXXGPXRGPXXR 666
P P P PPP S G G P P GP P
Sbjct: 318 PGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPP 377
Query: 667 KXGPPLXLGFFXXXRPPPPP 726
PP PPPPP
Sbjct: 378 PSRPPAPPSGHGMIPPPPPP 397
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 33.9 bits (74), Expect = 0.19
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = -1
Query: 615 GGXPPXFXGXPXXPPXDXXXXPXPPXXGPGG 523
GG PP G P PP P PP PGG
Sbjct: 749 GGLPPISGGPPPPPPPPGGCPPPPPPPPPGG 779
Score = 31.5 bits (68), Expect = 1.00
Identities = 18/53 (33%), Positives = 18/53 (33%)
Frame = +3
Query: 603 GXXPXKKXXAPXRPXKGPQXP*XRPPAXXGVFXXXPPPPPPXKXXXPXXXPAP 761
G P P P G P PP G F PPPPPP P P
Sbjct: 750 GLPPISGGPPPPPPPPGGCPP-PPPPPPPGGFKGGPPPPPPPGMFAPMAPVIP 801
Score = 30.7 bits (66), Expect = 1.7
Identities = 20/68 (29%), Positives = 21/68 (30%)
Frame = +1
Query: 712 PPPPPGKXXYXNXXPRPXLKXGQXPPARXFXPXXXXXPXRXKLPSXAXPXXXPAXAFPPX 891
PPPPPG P P G PP P + P P PP
Sbjct: 713 PPPPPGLPPITGGPPPPP-PPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 771
Query: 892 XRPPXLPP 915
PP PP
Sbjct: 772 PPPP--PP 777
Score = 30.7 bits (66), Expect = 1.7
Identities = 25/97 (25%), Positives = 28/97 (28%), Gaps = 3/97 (3%)
Frame = +3
Query: 603 GXXPXKKXXAPXRPXKGPQXP*XRPPAXXGVFXXXPPPPPPXKXXXPXXXPAP--XLKXG 776
G P P G P P + PPPPPP P P P K G
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783
Query: 777 XXTPRPXFLXXSXPXXXPAXTPLPGXPXLXTRXR-FP 884
P P + P P P + R FP
Sbjct: 784 PPPPPPPGMFAPMAPVIPDYLPPKKVPKVDGPMRKFP 820
Score = 30.3 bits (65), Expect = 2.3
Identities = 19/68 (27%), Positives = 19/68 (27%)
Frame = +1
Query: 712 PPPPPGKXXYXNXXPRPXLKXGQXPPARXFXPXXXXXPXRXKLPSXAXPXXXPAXAFPPX 891
PPPPPG P P G PP P P P P PP
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 787
Query: 892 XRPPXLPP 915
P P
Sbjct: 788 PPPGMFAP 795
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 33.9 bits (74), Expect = 0.19
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = -1
Query: 615 GGXPPXFXGXPXXPPXDXXXXPXPPXXGPGG 523
GG PP G P PP P PP PGG
Sbjct: 749 GGLPPISGGPPPPPPPPGGCPPPPPPPPPGG 779
Score = 31.5 bits (68), Expect = 1.00
Identities = 18/53 (33%), Positives = 18/53 (33%)
Frame = +3
Query: 603 GXXPXKKXXAPXRPXKGPQXP*XRPPAXXGVFXXXPPPPPPXKXXXPXXXPAP 761
G P P P G P PP G F PPPPPP P P
Sbjct: 750 GLPPISGGPPPPPPPPGGCPP-PPPPPPPGGFKGGPPPPPPPGMFAPMAPVIP 801
Score = 30.7 bits (66), Expect = 1.7
Identities = 20/68 (29%), Positives = 21/68 (30%)
Frame = +1
Query: 712 PPPPPGKXXYXNXXPRPXLKXGQXPPARXFXPXXXXXPXRXKLPSXAXPXXXPAXAFPPX 891
PPPPPG P P G PP P + P P PP
Sbjct: 713 PPPPPGLPPITGGPPPPP-PPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 771
Query: 892 XRPPXLPP 915
PP PP
Sbjct: 772 PPPP--PP 777
Score = 30.7 bits (66), Expect = 1.7
Identities = 25/97 (25%), Positives = 28/97 (28%), Gaps = 3/97 (3%)
Frame = +3
Query: 603 GXXPXKKXXAPXRPXKGPQXP*XRPPAXXGVFXXXPPPPPPXKXXXPXXXPAP--XLKXG 776
G P P G P P + PPPPPP P P P K G
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783
Query: 777 XXTPRPXFLXXSXPXXXPAXTPLPGXPXLXTRXR-FP 884
P P + P P P + R FP
Sbjct: 784 PPPPPPPGMFAPMAPVIPDYLPPKKVPKVDGPMRKFP 820
Score = 30.3 bits (65), Expect = 2.3
Identities = 19/68 (27%), Positives = 19/68 (27%)
Frame = +1
Query: 712 PPPPPGKXXYXNXXPRPXLKXGQXPPARXFXPXXXXXPXRXKLPSXAXPXXXPAXAFPPX 891
PPPPPG P P G PP P P P P PP
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 787
Query: 892 XRPPXLPP 915
P P
Sbjct: 788 PPPGMFAP 795
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 33.9 bits (74), Expect = 0.19
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = -1
Query: 615 GGXPPXFXGXPXXPPXDXXXXPXPPXXGPGG 523
GG PP G P PP P PP PGG
Sbjct: 332 GGLPPISGGPPPPPPPPGGCPPPPPPPPPGG 362
Score = 31.5 bits (68), Expect = 1.00
Identities = 18/53 (33%), Positives = 18/53 (33%)
Frame = +3
Query: 603 GXXPXKKXXAPXRPXKGPQXP*XRPPAXXGVFXXXPPPPPPXKXXXPXXXPAP 761
G P P P G P PP G F PPPPPP P P
Sbjct: 333 GLPPISGGPPPPPPPPGGCPP-PPPPPPPGGFKGGPPPPPPPGMFAPMAPVIP 384
Score = 30.7 bits (66), Expect = 1.7
Identities = 20/68 (29%), Positives = 21/68 (30%)
Frame = +1
Query: 712 PPPPPGKXXYXNXXPRPXLKXGQXPPARXFXPXXXXXPXRXKLPSXAXPXXXPAXAFPPX 891
PPPPPG P P G PP P + P P PP
Sbjct: 296 PPPPPGLPPITGGPPPPP-PPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 354
Query: 892 XRPPXLPP 915
PP PP
Sbjct: 355 PPPP--PP 360
Score = 30.7 bits (66), Expect = 1.7
Identities = 25/97 (25%), Positives = 28/97 (28%), Gaps = 3/97 (3%)
Frame = +3
Query: 603 GXXPXKKXXAPXRPXKGPQXP*XRPPAXXGVFXXXPPPPPPXKXXXPXXXPAP--XLKXG 776
G P P G P P + PPPPPP P P P K G
Sbjct: 307 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 366
Query: 777 XXTPRPXFLXXSXPXXXPAXTPLPGXPXLXTRXR-FP 884
P P + P P P + R FP
Sbjct: 367 PPPPPPPGMFAPMAPVIPDYLPPKKVPKVDGPMRKFP 403
Score = 30.3 bits (65), Expect = 2.3
Identities = 19/68 (27%), Positives = 19/68 (27%)
Frame = +1
Query: 712 PPPPPGKXXYXNXXPRPXLKXGQXPPARXFXPXXXXXPXRXKLPSXAXPXXXPAXAFPPX 891
PPPPPG P P G PP P P P P PP
Sbjct: 311 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 370
Query: 892 XRPPXLPP 915
P P
Sbjct: 371 PPPGMFAP 378
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 33.5 bits (73), Expect = 0.25
Identities = 16/50 (32%), Positives = 17/50 (34%)
Frame = +3
Query: 708 PPPPPPXKXXXPXXXPAPXLKXGXXTPRPXFLXXSXPXXXPAXTPLPGXP 857
PPPPPP P P P + P P P P P P P
Sbjct: 31 PPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPP 80
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 31.9 bits (69), Expect = 0.76
Identities = 18/50 (36%), Positives = 20/50 (40%)
Frame = +3
Query: 708 PPPPPPXKXXXPXXXPAPXLKXGXXTPRPXFLXXSXPXXXPAXTPLPGXP 857
P PPPP P P P T RP + S P PA P+ G P
Sbjct: 74 PLPPPPLPLSNPPAKPTPPPPPPKPTIRPPPIPASPPPRPPASEPV-GIP 122
Score = 28.7 bits (61), Expect = 7.0
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +3
Query: 639 RPXKGPQXP*XRPPAXXGVFXXXPPPPPPXKXXXPXXXPA 758
RP + P P P PPPPPP P PA
Sbjct: 68 RPTESPPLPPPPLPLSNPPAKPTPPPPPPKPTIRPPPIPA 107
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 31.9 bits (69), Expect = 0.76
Identities = 18/50 (36%), Positives = 20/50 (40%)
Frame = +3
Query: 708 PPPPPPXKXXXPXXXPAPXLKXGXXTPRPXFLXXSXPXXXPAXTPLPGXP 857
P PPPP P P P T RP + S P PA P+ G P
Sbjct: 296 PLPPPPLPLSNPPAKPTPPPPPPKPTIRPPPIPASPPPRPPASEPV-GIP 344
Score = 28.7 bits (61), Expect = 7.0
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +3
Query: 639 RPXKGPQXP*XRPPAXXGVFXXXPPPPPPXKXXXPXXXPA 758
RP + P P P PPPPPP P PA
Sbjct: 290 RPTESPPLPPPPLPLSNPPAKPTPPPPPPKPTIRPPPIPA 329
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 30.7 bits (66), Expect = 1.7
Identities = 18/60 (30%), Positives = 20/60 (33%)
Frame = +3
Query: 708 PPPPPPXKXXXPXXXPAPXLKXGXXTPRPXFLXXSXPXXXPAXTPLPGXPXLXTRXRFPP 887
P PPPP + P P P P P + P P P P P L PP
Sbjct: 465 PAPPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPPPP--PALEQEISGPP 522
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 30.7 bits (66), Expect = 1.7
Identities = 15/47 (31%), Positives = 15/47 (31%)
Frame = +3
Query: 708 PPPPPPXKXXXPXXXPAPXLKXGXXTPRPXFLXXSXPXXXPAXTPLP 848
PPPPPP P P P RP F P P P
Sbjct: 72 PPPPPPPMPCPPPPPPMPRPSCPCMMQRPSFYPSYVPQYYQPMMPQP 118
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 30.7 bits (66), Expect = 1.7
Identities = 15/50 (30%), Positives = 17/50 (34%)
Frame = +3
Query: 708 PPPPPPXKXXXPXXXPAPXLKXGXXTPRPXFLXXSXPXXXPAXTPLPGXP 857
P PPPP + P P P P P + P P P P P
Sbjct: 472 PAPPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPPPPPPP 521
>AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical
protein Y53H1A.1 protein.
Length = 613
Score = 30.7 bits (66), Expect = 1.7
Identities = 27/96 (28%), Positives = 29/96 (30%), Gaps = 4/96 (4%)
Frame = +1
Query: 640 GPXRGPXXRKXGPPLXLGFFXXXRPPPPPGKXXYXNXXPRPXLKXGQXPPARXF---XPX 810
GP P GPP G+ PPPPP P P PP F
Sbjct: 83 GPSGPPVYHNQGPPR--GY-----PPPPPQGADTWRGAPPPAHHGHFGPPGHHFQGPPQH 135
Query: 811 XXXXPXRXKLPSXAXPXXXPA-XAFPPXXRPPXLPP 915
P R P P P PP + P PP
Sbjct: 136 FPPGPPRPHFPGPPGPHRPPEHYPGPPRPQAPAAPP 171
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 30.3 bits (65), Expect = 2.3
Identities = 18/57 (31%), Positives = 20/57 (35%)
Frame = -3
Query: 760 GAGXCXGXXXFXGGGGGGXXXKTPXXAGGLXYGXWGPFXGRXGAXXFXXGXXPXFXW 590
G G G + GG GGG GG YG G GR G+ G W
Sbjct: 26 GGGRGGGGGGYSGGRGGGYGGGGGGGYGGGGYGGGGRGGGRGGSNGSAGGRLRDVDW 82
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 30.3 bits (65), Expect = 2.3
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +3
Query: 633 PXRPXKGPQXP*XRPPAXXGVFXXXPPPPPPXKXXXP 743
P RP + P PP G + PPPPPP P
Sbjct: 30 PQRPQQCCCPPPPPPPPCGGGYEAPPPPPPPSYAGGP 66
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 30.3 bits (65), Expect = 2.3
Identities = 21/69 (30%), Positives = 22/69 (31%)
Frame = +3
Query: 642 PXKGPQXP*XRPPAXXGVFXXXPPPPPPXKXXXPXXXPAPXLKXGXXTPRPXFLXXSXPX 821
P P P PP+ PPPPPP P P P P P L
Sbjct: 1336 PSPPPPPPPPPPPSDDLTPVPPPPPPPPTMSKAPTGVPLP-------VPPPPPLFSPSMI 1388
Query: 822 XXPAXTPLP 848
P PLP
Sbjct: 1389 LPPPPPPLP 1397
>U58753-8|AAC24439.1| 633|Caenorhabditis elegans Hypothetical
protein W03B1.9 protein.
Length = 633
Score = 26.6 bits (56), Expect(2) = 3.6
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3
Query: 675 PPAXXGVFXXXPPPPPP 725
PP G+ PPPPPP
Sbjct: 434 PPLQVGLVGRVPPPPPP 450
Score = 21.4 bits (43), Expect(2) = 3.6
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = +3
Query: 708 PPPPPPXK 731
PPPPPP +
Sbjct: 448 PPPPPPRR 455
>U58753-7|AAC24433.1| 581|Caenorhabditis elegans Hypothetical
protein W03B1.5 protein.
Length = 581
Score = 26.6 bits (56), Expect(2) = 3.6
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3
Query: 675 PPAXXGVFXXXPPPPPP 725
PP G+ PPPPPP
Sbjct: 382 PPLQVGLVGRVPPPPPP 398
Score = 21.4 bits (43), Expect(2) = 3.6
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = +3
Query: 708 PPPPPPXK 731
PPPPPP +
Sbjct: 396 PPPPPPRR 403
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 29.5 bits (63), Expect = 4.0
Identities = 36/145 (24%), Positives = 38/145 (26%), Gaps = 1/145 (0%)
Frame = +1
Query: 484 GPLSPXXPKXNXPPPGSXXWGXGXXPXIXXGXXGXSXKXXGXTPXKKXXPXXGPXRGPXX 663
GP P + PPG G S P P P G
Sbjct: 393 GPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSG--- 449
Query: 664 RKXGPPLXLGFFXXXRPPPPPGKXXYXNXXPRPXLKXGQXPPARXFXPXXXXXPXRXKLP 843
GPP G F PP G N P G P P P
Sbjct: 450 ---GPP---GPFNPSGAPPSGGPPGPFNPSGAPP-SGGPPGPFDPSGAPPSGGPPGPFNP 502
Query: 844 SXAXPXXXPAXAFPPXXRPP-XLPP 915
S A P P F P PP +PP
Sbjct: 503 SGAPPSGGPPGPFDPSGAPPSGMPP 527
Score = 28.3 bits (60), Expect = 9.3
Identities = 34/140 (24%), Positives = 35/140 (25%)
Frame = +1
Query: 484 GPLSPXXPKXNXPPPGSXXWGXGXXPXIXXGXXGXSXKXXGXTPXKKXXPXXGPXRGPXX 663
GP P + PPG G S P P P G
Sbjct: 363 GPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSG--- 419
Query: 664 RKXGPPLXLGFFXXXRPPPPPGKXXYXNXXPRPXLKXGQXPPARXFXPXXXXXPXRXKLP 843
GPP G F PP G N P G P P P
Sbjct: 420 ---GPP---GPFNPSGAPPSGGPPGPFNPSGAPP-SGGPPGPFNPSGAPPSGGPPGPFNP 472
Query: 844 SXAXPXXXPAXAFPPXXRPP 903
S A P P F P PP
Sbjct: 473 SGAPPSGGPPGPFDPSGAPP 492
>AL132898-7|CAC14410.1| 413|Caenorhabditis elegans Hypothetical
protein Y59A8B.10 protein.
Length = 413
Score = 29.5 bits (63), Expect = 4.0
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = -3
Query: 724 GGGGGGXXXKTPXXAGGLXYGXWGPFXGRXGAXXFXXG 611
GGGGGG GG G GP G G F G
Sbjct: 265 GGGGGGMNVGAAGFGGGGGQGYGGPQFGGQGGPQFGNG 302
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 29.1 bits (62), Expect = 5.3
Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Frame = +1
Query: 712 PPPPPGKXXYXNXXPRPXLKXGQXPPARXFXPXXXXXPXRXK-LPSXAXPXXXPAXAFPP 888
PPPPP Y P P G PP + P P + + P P +PP
Sbjct: 680 PPPPPQGQQYYGGPPPPGQPYG--PPG-GYPPQQQRPPYQAQPYPGPPPPQQQRGYGYPP 736
Query: 889 XXRP 900
+P
Sbjct: 737 PPQP 740
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 29.1 bits (62), Expect = 5.3
Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Frame = +1
Query: 712 PPPPPGKXXYXNXXPRPXLKXGQXPPARXFXPXXXXXPXRXK-LPSXAXPXXXPAXAFPP 888
PPPPP Y P P G PP + P P + + P P +PP
Sbjct: 680 PPPPPQGQQYYGGPPPPGQPYG--PPG-GYPPQQQRPPYQAQPYPGPPPPQQQRGYGYPP 736
Query: 889 XXRP 900
+P
Sbjct: 737 PPQP 740
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 29.1 bits (62), Expect = 5.3
Identities = 15/47 (31%), Positives = 17/47 (36%)
Frame = +3
Query: 648 KGPQXP*XRPPAXXGVFXXXPPPPPPXKXXXPXXXPAPXLKXGXXTP 788
K P PP + PPPPPP P P + G TP
Sbjct: 64 KATPPPPPPPPPLISILQQAPPPPPPPPPPTLKAPPPPPI-LGLKTP 109
>AF016682-4|AAB66185.1| 263|Caenorhabditis elegans Hypothetical
protein T07D3.5 protein.
Length = 263
Score = 29.1 bits (62), Expect = 5.3
Identities = 28/107 (26%), Positives = 34/107 (31%), Gaps = 2/107 (1%)
Frame = +1
Query: 574 GXXGXSXKXXGXT--PXKKXXPXXGPXRGPXXRKXGPPLXLGFFXXXRPPPPPGKXXYXN 747
G G S G T P K P GP P R PP+ +G P PG
Sbjct: 155 GVVGMSNLGEGSTAPPYLKFPPVVGPPISPPPRHFPPPVIIGGGEVVIGKPYPGDASTPP 214
Query: 748 XXPRPXLKXGQXPPARXFXPXXXXXPXRXKLPSXAXPXXXPAXAFPP 888
P+ G+ P P + L + P P FPP
Sbjct: 215 PYPKFPPVVGRNIPLPVNFPRGEVVIGKGSLGEASTP--PPYSEFPP 259
>AC006666-4|AAK21415.1| 109|Caenorhabditis elegans Hypothetical
protein H31G24.1 protein.
Length = 109
Score = 29.1 bits (62), Expect = 5.3
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +3
Query: 672 RPPAXXGVFXXXPPPPPPXKXXXPXXXPAP 761
+P A + PPPPPP P PAP
Sbjct: 73 QPYAQSPIAAVPPPPPPPPPQPAPAQAPAP 102
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 28.7 bits (61), Expect = 7.0
Identities = 16/41 (39%), Positives = 16/41 (39%)
Frame = -3
Query: 760 GAGXCXGXXXFXGGGGGGXXXKTPXXAGGLXYGXWGPFXGR 638
G G C G GGGGGG GG G G GR
Sbjct: 152 GGGGCGGGGGGCGGGGGGCGGGGGGGCGGGGGGGCGGGCGR 192
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 28.7 bits (61), Expect = 7.0
Identities = 16/45 (35%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Frame = -1
Query: 651 PXGAXXGXXFFXGGXPPX---FXGXPXXPPXDXXXXPXPPXXGPG 526
P G F GG PP G P PP P PP G G
Sbjct: 80 PGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPPPSGLG 124
>Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical
protein R07E3.6 protein.
Length = 927
Score = 28.7 bits (61), Expect = 7.0
Identities = 14/55 (25%), Positives = 18/55 (32%)
Frame = +3
Query: 678 PAXXGVFXXXPPPPPPXKXXXPXXXPAPXLKXGXXTPRPXFLXXSXPXXXPAXTP 842
P G PP PPP P P ++ P+P + P TP
Sbjct: 740 PPPQGYVGPLPPAPPPPTFRVAPQVPLPVVQTTQTAPKPTLPPTTLPVLTTNKTP 794
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 28.7 bits (61), Expect = 7.0
Identities = 15/46 (32%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Frame = +3
Query: 708 PPPPPPXKXXXPXXXPAP-----XLKXGXXTPRPXFLXXSXPXXXP 830
PPPPPP P P P PRP ++ S P P
Sbjct: 134 PPPPPPHYPPPPPHYPPPPPAPHSAYIDHSAPRPAYIEHSAPPPQP 179
>AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical
protein Y47D7A.13 protein.
Length = 311
Score = 28.7 bits (61), Expect = 7.0
Identities = 16/49 (32%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Frame = -3
Query: 775 PXLXXGAGXCXGXXXFXGGGG-GGXXXKTPXXAGGLXYGXWGPFXGRXG 632
P G G + G GG GG P GG Y GP G G
Sbjct: 55 PQAPIGGGYAQPGGGYGGAGGFGGAYQAAPAIGGGGSYAGAGPIGGGFG 103
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.3 bits (60), Expect = 9.3
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = -3
Query: 760 GAGXCXGXXXFXGGGGGGXXXKTPXXAGGLXYGXWGPFXGRXG 632
G G C G GGGGGG GG G G G G
Sbjct: 106 GGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCG 148
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.3 bits (60), Expect = 9.3
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = -3
Query: 760 GAGXCXGXXXFXGGGGGGXXXKTPXXAGGLXYGXWGPFXGRXG 632
G G C G GGGGGG GG G G G G
Sbjct: 106 GGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCG 148
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 28.3 bits (60), Expect = 9.3
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +1
Query: 841 PSXAXPXXXPAXAFPPXXRPPXLPP 915
P P P PP RPP LPP
Sbjct: 349 PPTLPPVQVPIQTLPPQTRPPQLPP 373
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 28.3 bits (60), Expect = 9.3
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +1
Query: 841 PSXAXPXXXPAXAFPPXXRPPXLPP 915
P P P PP RPP LPP
Sbjct: 446 PPTLPPVQVPIQTLPPQTRPPQLPP 470
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 28.3 bits (60), Expect = 9.3
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +3
Query: 675 PPAXXGVFXXXPPPPPP 725
PP G F PPPPPP
Sbjct: 665 PPGGLGGFMPPPPPPPP 681
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 28.3 bits (60), Expect = 9.3
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +3
Query: 675 PPAXXGVFXXXPPPPPP 725
PP G F PPPPPP
Sbjct: 665 PPGGLGGFMPPPPPPPP 681
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.313 0.143 0.474
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,918,214
Number of Sequences: 27780
Number of extensions: 185612
Number of successful extensions: 1733
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2688795166
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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