BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_F15 (1209 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 32 0.71 AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 2.9 AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 2.9 AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 2.9 U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 30 3.8 U53153-1|AAC69039.4| 715|Caenorhabditis elegans Hypothetical pr... 29 8.7 >Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical protein E02A10.2 protein. Length = 385 Score = 32.3 bits (70), Expect = 0.71 Identities = 27/98 (27%), Positives = 27/98 (27%) Frame = -2 Query: 1202 GGGEXXXCGGGXCXFGGGXDXXGAGSLWLSXXPXXEXPXXXXXXXXXXXGCXXAXXXXRG 1023 GGG GGG C GGG G G P P GC G Sbjct: 80 GGGGGCGGGGGGC-GGGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGGGGCGGGCGGGGG 138 Query: 1022 GLCXVXGXXRXXGXXCGCLGSAXRRGAHXXXXAGXAVG 909 G C G G GC G G G G Sbjct: 139 GGCGGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGG 176 >AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(q/n-rich)-domain-bearingprotein protein 75, isoform b protein. Length = 518 Score = 30.3 bits (65), Expect = 2.9 Identities = 12/25 (48%), Positives = 12/25 (48%) Frame = +1 Query: 1129 PAPXXSXPPPNXHXPPPXXXXSPPP 1203 P S PPP PPP SPPP Sbjct: 258 PPAAGSPPPPRTGSPPPPPTGSPPP 282 Score = 28.7 bits (61), Expect = 8.7 Identities = 11/25 (44%), Positives = 11/25 (44%) Frame = +1 Query: 1129 PAPXXSXPPPNXHXPPPXXXXSPPP 1203 P PPP PPP SPPP Sbjct: 267 PRTGSPPPPPTGSPPPPPAGGSPPP 291 Score = 28.7 bits (61), Expect = 8.7 Identities = 11/25 (44%), Positives = 11/25 (44%) Frame = +1 Query: 1129 PAPXXSXPPPNXHXPPPXXXXSPPP 1203 P P PP PPP SPPP Sbjct: 299 PPPPPRGSPPTGSLPPPQAGGSPPP 323 >AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(q/n-rich)-domain-bearingprotein protein 75, isoform c protein. Length = 539 Score = 30.3 bits (65), Expect = 2.9 Identities = 12/25 (48%), Positives = 12/25 (48%) Frame = +1 Query: 1129 PAPXXSXPPPNXHXPPPXXXXSPPP 1203 P S PPP PPP SPPP Sbjct: 279 PPAAGSPPPPRTGSPPPPPTGSPPP 303 Score = 28.7 bits (61), Expect = 8.7 Identities = 11/25 (44%), Positives = 11/25 (44%) Frame = +1 Query: 1129 PAPXXSXPPPNXHXPPPXXXXSPPP 1203 P PPP PPP SPPP Sbjct: 288 PRTGSPPPPPTGSPPPPPAGGSPPP 312 Score = 28.7 bits (61), Expect = 8.7 Identities = 11/25 (44%), Positives = 11/25 (44%) Frame = +1 Query: 1129 PAPXXSXPPPNXHXPPPXXXXSPPP 1203 P P PP PPP SPPP Sbjct: 320 PPPPPRGSPPTGSLPPPQAGGSPPP 344 >AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q/n-rich)-domain-bearingprotein protein 75, isoform a protein. Length = 524 Score = 30.3 bits (65), Expect = 2.9 Identities = 12/25 (48%), Positives = 12/25 (48%) Frame = +1 Query: 1129 PAPXXSXPPPNXHXPPPXXXXSPPP 1203 P S PPP PPP SPPP Sbjct: 264 PPAAGSPPPPRTGSPPPPPTGSPPP 288 Score = 28.7 bits (61), Expect = 8.7 Identities = 11/25 (44%), Positives = 11/25 (44%) Frame = +1 Query: 1129 PAPXXSXPPPNXHXPPPXXXXSPPP 1203 P PPP PPP SPPP Sbjct: 273 PRTGSPPPPPTGSPPPPPAGGSPPP 297 Score = 28.7 bits (61), Expect = 8.7 Identities = 11/25 (44%), Positives = 11/25 (44%) Frame = +1 Query: 1129 PAPXXSXPPPNXHXPPPXXXXSPPP 1203 P P PP PPP SPPP Sbjct: 305 PPPPPRGSPPTGSLPPPQAGGSPPP 329 >U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hedgehog-like family)protein 7 protein. Length = 401 Score = 29.9 bits (64), Expect = 3.8 Identities = 13/28 (46%), Positives = 14/28 (50%) Frame = +1 Query: 1120 QRDPAPXXSXPPPNXHXPPPXXXXSPPP 1203 Q+ P P PPP H PPP PPP Sbjct: 129 QQQPPP----PPPPPHYPPPPPHYPPPP 152 >U53153-1|AAC69039.4| 715|Caenorhabditis elegans Hypothetical protein T19A5.3a protein. Length = 715 Score = 28.7 bits (61), Expect = 8.7 Identities = 13/26 (50%), Positives = 14/26 (53%) Frame = -2 Query: 1202 GGGEXXXCGGGXCXFGGGXDXXGAGS 1125 GGG GGG FGGG G+GS Sbjct: 482 GGGGGGGFGGGGGGFGGGGGGFGSGS 507 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,589,279 Number of Sequences: 27780 Number of extensions: 133246 Number of successful extensions: 983 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 404 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 830 length of database: 12,740,198 effective HSP length: 83 effective length of database: 10,434,458 effective search space used: 3328592102 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -