Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_F15
         (1209 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    32   0.71 
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    30   2.9  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    30   2.9  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    30   2.9  
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    30   3.8  
U53153-1|AAC69039.4|  715|Caenorhabditis elegans Hypothetical pr...    29   8.7  

>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical protein
            E02A10.2 protein.
          Length = 385

 Score = 32.3 bits (70), Expect = 0.71
 Identities = 27/98 (27%), Positives = 27/98 (27%)
 Frame = -2

Query: 1202 GGGEXXXCGGGXCXFGGGXDXXGAGSLWLSXXPXXEXPXXXXXXXXXXXGCXXAXXXXRG 1023
            GGG     GGG C  GGG    G G       P    P           GC        G
Sbjct: 80   GGGGGCGGGGGGC-GGGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGGGGCGGGCGGGGG 138

Query: 1022 GLCXVXGXXRXXGXXCGCLGSAXRRGAHXXXXAGXAVG 909
            G C   G     G   GC G     G       G   G
Sbjct: 139  GGCGGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGG 176


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform b protein.
          Length = 518

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +1

Query: 1129 PAPXXSXPPPNXHXPPPXXXXSPPP 1203
            P    S PPP    PPP    SPPP
Sbjct: 258  PPAAGSPPPPRTGSPPPPPTGSPPP 282



 Score = 28.7 bits (61), Expect = 8.7
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +1

Query: 1129 PAPXXSXPPPNXHXPPPXXXXSPPP 1203
            P      PPP    PPP    SPPP
Sbjct: 267  PRTGSPPPPPTGSPPPPPAGGSPPP 291



 Score = 28.7 bits (61), Expect = 8.7
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +1

Query: 1129 PAPXXSXPPPNXHXPPPXXXXSPPP 1203
            P P     PP    PPP    SPPP
Sbjct: 299  PPPPPRGSPPTGSLPPPQAGGSPPP 323


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform c protein.
          Length = 539

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +1

Query: 1129 PAPXXSXPPPNXHXPPPXXXXSPPP 1203
            P    S PPP    PPP    SPPP
Sbjct: 279  PPAAGSPPPPRTGSPPPPPTGSPPP 303



 Score = 28.7 bits (61), Expect = 8.7
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +1

Query: 1129 PAPXXSXPPPNXHXPPPXXXXSPPP 1203
            P      PPP    PPP    SPPP
Sbjct: 288  PRTGSPPPPPTGSPPPPPAGGSPPP 312



 Score = 28.7 bits (61), Expect = 8.7
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +1

Query: 1129 PAPXXSXPPPNXHXPPPXXXXSPPP 1203
            P P     PP    PPP    SPPP
Sbjct: 320  PPPPPRGSPPTGSLPPPQAGGSPPP 344


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform a protein.
          Length = 524

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +1

Query: 1129 PAPXXSXPPPNXHXPPPXXXXSPPP 1203
            P    S PPP    PPP    SPPP
Sbjct: 264  PPAAGSPPPPRTGSPPPPPTGSPPP 288



 Score = 28.7 bits (61), Expect = 8.7
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +1

Query: 1129 PAPXXSXPPPNXHXPPPXXXXSPPP 1203
            P      PPP    PPP    SPPP
Sbjct: 273  PRTGSPPPPPTGSPPPPPAGGSPPP 297



 Score = 28.7 bits (61), Expect = 8.7
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +1

Query: 1129 PAPXXSXPPPNXHXPPPXXXXSPPP 1203
            P P     PP    PPP    SPPP
Sbjct: 305  PPPPPRGSPPTGSLPPPQAGGSPPP 329


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
            (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +1

Query: 1120 QRDPAPXXSXPPPNXHXPPPXXXXSPPP 1203
            Q+ P P    PPP  H PPP     PPP
Sbjct: 129  QQQPPP----PPPPPHYPPPPPHYPPPP 152


>U53153-1|AAC69039.4|  715|Caenorhabditis elegans Hypothetical protein
            T19A5.3a protein.
          Length = 715

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -2

Query: 1202 GGGEXXXCGGGXCXFGGGXDXXGAGS 1125
            GGG     GGG   FGGG    G+GS
Sbjct: 482  GGGGGGGFGGGGGGFGGGGGGFGSGS 507


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,589,279
Number of Sequences: 27780
Number of extensions: 133246
Number of successful extensions: 983
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3328592102
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)