Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_F14
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    27   2.7  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    27   3.6  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    27   4.8  

>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 382 PRSSLKNXPVITTFTKKSLVALSQSPEDLPSPHFPVPSDK 263
           P+S   + P   + T+KS V      +++ S HF VP  K
Sbjct: 442 PKSQFSSSPTKESTTRKSEVEPPSPSKEIKSSHFSVPEFK 481


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 166 NAQVSMPPGLRREVSDHQPIFKVSPTPSRYSRLCHLGQGNGGR 294
           N   S PP      S++    +  P+P RYS   +  +G+GGR
Sbjct: 298 NYNASRPPSNHPHSSNYPSSSRRKPSPDRYSN--YSSRGSGGR 338


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = -2

Query: 388 SLPRSSLKNXPVITTFTKKSLVALSQSPEDLPSPHFPVPSDKVVNIARVSD*P*KLAGDR 209
           SLP S +     +   +     +LS  P  +PS    +P+D +  ++  S  P K   +R
Sbjct: 248 SLPISDVTRALPLAPASNSQHPSLSSQPVSVPSNTINIPTDSLSIVSNPSQTPAKFDSNR 307

Query: 208 I 206
           I
Sbjct: 308 I 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,006,913
Number of Sequences: 5004
Number of extensions: 58093
Number of successful extensions: 132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)