Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_F14
         (899 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g32350.1 68417.m04605 expressed protein contains Pfam profile...    30   2.4  
At1g16260.1 68414.m01947 protein kinase family protein contains ...    29   4.2  
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar...    29   5.6  
At1g43330.1 68414.m04995 myb family protein-related contains sim...    29   5.6  
At4g00840.1 68417.m00115 zinc finger (DHHC type) family protein ...    28   7.3  
At3g03090.1 68416.m00305 sugar transporter family protein simila...    28   9.7  

>At4g32350.1 68417.m04605 expressed protein contains Pfam profile:
           PF03398 eukaryotic protein of unknown function, DUF292
          Length = 732

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +1

Query: 214 HQPIFKVSPTPSRYSRLCHLGQGNGGREGLRD 309
           HQPIF    T        +LGQGNG R G+ D
Sbjct: 296 HQPIFNEGDTIVMKVNYGNLGQGNGHRPGVVD 327


>At1g16260.1 68414.m01947 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 720

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +3

Query: 297 RSSGLWERATKDFLV-KVVITGXFFNDDRGKLTGQAYGTRVLGPGGDSTSYGGRLD 461
           R+ GL  +    FL   V  T  F ++D    T +   +R+LG GG  T Y G L+
Sbjct: 355 RNGGLLLQQQTSFLHGSVNRTKVFSSNDLENATDRFNASRILGQGGQGTVYKGMLE 410


>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
           SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
           {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
           sapiens] GI:3523150; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 646

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +3

Query: 369 NDDRGKLTG--QAYGTRVLGPGGDSTSYGGR 455
           N+DRG   G    YG R  G GG  + YGGR
Sbjct: 52  NNDRGGYGGANSGYGGRGQGYGGRGSGYGGR 82


>At1g43330.1 68414.m04995 myb family protein-related contains
           similarity to myb protein [Gallus gallus]
           gi|63628|emb|CAA32767
          Length = 118

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 779 ICNYLSAFCNFLFNHQHSSNI 841
           ICNY+  F + LFN+   SNI
Sbjct: 78  ICNYVYIFLSILFNYNKKSNI 98


>At4g00840.1 68417.m00115 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 262

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +2

Query: 278 REMGGGKVFGTLGESDQGLFGKGGY 352
           REMGGG        +DQG FG  GY
Sbjct: 23  REMGGGDSLEAGTSTDQGAFGSLGY 47


>At3g03090.1 68416.m00305 sugar transporter family protein similar
           to xylose permease [Bacillus megaterium]  GI:1924928;
           contains Pfam profile PF00083: major facilitator
           superfamily protein
          Length = 503

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 580 ADK*VFLPRSHTPEADASIPALPPICLFKSIAALAF 473
           A+K   L  +H+PE  + + A+PP  LF ++ AL F
Sbjct: 27  AEKEPLLKENHSPENYSVLAAIPPF-LFPALGALLF 61


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,191,593
Number of Sequences: 28952
Number of extensions: 328813
Number of successful extensions: 829
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2120147664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)