BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_F14 (899 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g32350.1 68417.m04605 expressed protein contains Pfam profile... 30 2.4 At1g16260.1 68414.m01947 protein kinase family protein contains ... 29 4.2 At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 29 5.6 At1g43330.1 68414.m04995 myb family protein-related contains sim... 29 5.6 At4g00840.1 68417.m00115 zinc finger (DHHC type) family protein ... 28 7.3 At3g03090.1 68416.m00305 sugar transporter family protein simila... 28 9.7 >At4g32350.1 68417.m04605 expressed protein contains Pfam profile: PF03398 eukaryotic protein of unknown function, DUF292 Length = 732 Score = 29.9 bits (64), Expect = 2.4 Identities = 15/32 (46%), Positives = 17/32 (53%) Frame = +1 Query: 214 HQPIFKVSPTPSRYSRLCHLGQGNGGREGLRD 309 HQPIF T +LGQGNG R G+ D Sbjct: 296 HQPIFNEGDTIVMKVNYGNLGQGNGHRPGVVD 327 >At1g16260.1 68414.m01947 protein kinase family protein contains Pfam domain, PF00069: Protein kinase domain Length = 720 Score = 29.1 bits (62), Expect = 4.2 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Frame = +3 Query: 297 RSSGLWERATKDFLV-KVVITGXFFNDDRGKLTGQAYGTRVLGPGGDSTSYGGRLD 461 R+ GL + FL V T F ++D T + +R+LG GG T Y G L+ Sbjct: 355 RNGGLLLQQQTSFLHGSVNRTKVFSSNDLENATDRFNASRILGQGGQGTVYKGMLE 410 >At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to SP|O00571 DEAD-box protein 3 (Helicase-like protein 2) {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo sapiens] GI:3523150; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 646 Score = 28.7 bits (61), Expect = 5.6 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%) Frame = +3 Query: 369 NDDRGKLTG--QAYGTRVLGPGGDSTSYGGR 455 N+DRG G YG R G GG + YGGR Sbjct: 52 NNDRGGYGGANSGYGGRGQGYGGRGSGYGGR 82 >At1g43330.1 68414.m04995 myb family protein-related contains similarity to myb protein [Gallus gallus] gi|63628|emb|CAA32767 Length = 118 Score = 28.7 bits (61), Expect = 5.6 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +2 Query: 779 ICNYLSAFCNFLFNHQHSSNI 841 ICNY+ F + LFN+ SNI Sbjct: 78 ICNYVYIFLSILFNYNKKSNI 98 >At4g00840.1 68417.m00115 zinc finger (DHHC type) family protein contains Pfam profile PF01529: DHHC zinc finger domain Length = 262 Score = 28.3 bits (60), Expect = 7.3 Identities = 13/25 (52%), Positives = 14/25 (56%) Frame = +2 Query: 278 REMGGGKVFGTLGESDQGLFGKGGY 352 REMGGG +DQG FG GY Sbjct: 23 REMGGGDSLEAGTSTDQGAFGSLGY 47 >At3g03090.1 68416.m00305 sugar transporter family protein similar to xylose permease [Bacillus megaterium] GI:1924928; contains Pfam profile PF00083: major facilitator superfamily protein Length = 503 Score = 27.9 bits (59), Expect = 9.7 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = -2 Query: 580 ADK*VFLPRSHTPEADASIPALPPICLFKSIAALAF 473 A+K L +H+PE + + A+PP LF ++ AL F Sbjct: 27 AEKEPLLKENHSPENYSVLAAIPPF-LFPALGALLF 61 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,191,593 Number of Sequences: 28952 Number of extensions: 328813 Number of successful extensions: 829 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 802 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 828 length of database: 12,070,560 effective HSP length: 81 effective length of database: 9,725,448 effective search space used: 2120147664 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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