Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_F12
         (956 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6AZY7 Cluster: Scavenger receptor class A member 3; n=...    33   8.2  

>UniRef50_Q6AZY7 Cluster: Scavenger receptor class A member 3; n=19;
           Tetrapoda|Rep: Scavenger receptor class A member 3 -
           Homo sapiens (Human)
          Length = 606

 Score = 33.5 bits (73), Expect = 8.2
 Identities = 19/64 (29%), Positives = 22/64 (34%)
 Frame = -2

Query: 601 GPXGGPXVXXFXXGXXPXXWXTXXXPLGXXXPVPPTQKPGARXXXGXXXXGGPKXXPXXP 422
           GP G P          P        P+G   PV P   PG +   G    GGP+  P   
Sbjct: 481 GPKGDPGSLGPLGPQGPQGQPGEAGPVGERGPVGPRGFPGLKGSKGSFGTGGPRGQPGPK 540

Query: 421 GGXG 410
           G  G
Sbjct: 541 GDIG 544


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 414,886,806
Number of Sequences: 1657284
Number of extensions: 5526961
Number of successful extensions: 15451
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 7751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13305
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 88590537959
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)